PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G007600.1
Common NamePHAVU_003G007600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 295aa    MW: 34025.5 Da    PI: 5.9047
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G007600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.86.2e-111499597
                        -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                  B3  5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                           ++ l+sg + +p +f+++h  g++  ++  ++l  ++g + +v     +++g++++  GWkeF+k  +L++  ++vF+++g+s+f  +v 
  Phvul.003G007600.1 14 I-VESILQSGTMKVPTSFVSRHwqGMP--NP--VILSLPNGSKSKVFW--LNQDGGVWFCYGWKEFAKYSKLDVSHSIVFRYEGNSCF--NVI 97
                        4.456678889***********85433..54..9999999*9999988..9*************************************..776 PP

                        EE CS
                  B3 96 vf 97
                        +f
  Phvul.003G007600.1 98 IF 99
                        66 PP
2B347.23.9e-15201292398
                         EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +  +++ ++++++lv+p +fa+ + +k e+  t tl  e+gr+W+v+   + +s +      GW+eF  +n+Lk gD++ F++ +r+   +
  Phvul.003G007600.1 201 TCVIKEKHTERDLLVMPAEFAKPYLHK-EG--TATLFVEHGRTWKVET--EANSHKqLEVVFGWREFLLDNKLKLGDICAFEVLDRELLLF 286
                         5567889999***********999655.34..78999999********..4444443555568*******************877777777 PP

                         EEEEE- CS
                  B3  93 vvkvfr 98 
                         +v+++r
  Phvul.003G007600.1 287 KVTICR 292
                         898887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-195102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-176102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.3339102IPR003340B3 DNA binding domain
CDDcd100179.61E-101099No hitNo description
SMARTSM010194.1E-710102IPR003340B3 DNA binding domain
PfamPF023621.1E-81299IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-17193292IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-16193292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.323199294IPR003340B3 DNA binding domain
SMARTSM010192.8E-8199294IPR003340B3 DNA binding domain
PfamPF023628.0E-13201292IPR003340B3 DNA binding domain
CDDcd100172.59E-13214292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSSQCQGVQF LKVIVESILQ SGTMKVPTSF VSRHWQGMPN PVILSLPNGS KSKVFWLNQD  60
GGVWFCYGWK EFAKYSKLDV SHSIVFRYEG NSCFNVIIFG ESGLEIEYPL SRDATNEEVG  120
EIDEASYFCA NLSEERSKRP REEAQEEEEE KSNRQKTCSD YSKHKNSAGT SSNGQEDFRT  180
KLRMLREKVE EMFNYNPNHF TCVIKEKHTE RDLLVMPAEF AKPYLHKEGT ATLFVEHGRT  240
WKVETEANSH KQLEVVFGWR EFLLDNKLKL GDICAFEVLD RELLLFKVTI CRLE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G007600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153108.10.0hypothetical protein PHAVU_003G007600g
RefseqXP_007153111.10.0hypothetical protein PHAVU_003G007600g
TrEMBLV7C7540.0V7C754_PHAVU; Uncharacterized protein
STRINGXP_007153108.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140231017
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.18e-21B3 family protein