PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G007800.1
Common NamePHAVU_003G007800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 341aa    MW: 38333.6 Da    PI: 8.273
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G007800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix561e-1720110279
            trihelix   2 WtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstc 79 
                         Wt qe+l Li+a++ ++er  +g              + + +W++v ++++ +g+ rs++qC++kw+nl ++ykk++e e  ++s sss++
  Phvul.003G007800.1  20 WTLQETLILITAKKLDDERRLKGPsssssspssstrnSGELRWKWVENYCWTHGCLRSQNQCNDKWDNLLRDYKKVREYEATKSSSSSSHV 110
                         **************5555554432223334444444499******************************************9977777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.8291289IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.0E-61391IPR009057Homeodomain-like
PfamPF138372.1E-1119109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MSEPTLHPSS IAREYRKGNW TLQETLILIT AKKLDDERRL KGPSSSSSSP SSSTRNSGEL  60
RWKWVENYCW THGCLRSQNQ CNDKWDNLLR DYKKVREYEA TKSSSSSSHV SNNNEFRSYW  120
TMEKHQRKEQ KLPSNMLLQV YQAVTQILNN KSHTSSQLHH HHQHHLVVNV VHSPSQEQQQ  180
HVPLLASHSQ PLYQTAPVAS QPLLLLPPPS LPPPPVDSTT PPISEGSESS GTENKHKDDN  240
SESKRRKFEQ KLGSSIMQSA SELAQALGSC EEKKEKRHQE MMDLHHRALH SQQTRDQVSH  300
QGITNLVSAV TNLIAVIQSL ITSINKDHAG GNDDGDACSS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G007800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153114.10.0hypothetical protein PHAVU_003G007800g
TrEMBLV7C6W10.0V7C6W1_PHAVU; Uncharacterized protein
STRINGXP_007153114.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.15e-53Trihelix family protein