PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G011300.2
Common NamePHAVU_003G011300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 354aa    MW: 39641.3 Da    PI: 7.8517
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G011300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.2e-20219310499
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl ps+  + ++++lp  fae++ +g++     ++l+ ++gr+W+v++ yr+++    l++GW eF  +n+L egD++vF+l +++e el 
  Phvul.003G011300.2 219 VLRPSYLYRGCIMYLPSCFAEKNlNGVSG---FIKLQLSNGRQWSVRCLYRGGR--AKLSQGWFEFTVENNLGEGDVCVFELLRTKEVELQ 304
                         78899******************876743...59999999********665555..66*************************99****** PP

                         EEEE-S CS
                  B3  94 vkvfrk 99 
                         v+vfr 
  Phvul.003G011300.2 305 VTVFRV 310
                         ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-25208309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-24209310IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-23214309No hitNo description
PROSITE profilePS5086314.269216311IPR003340B3 DNA binding domain
SMARTSM010195.2E-19216311IPR003340B3 DNA binding domain
PfamPF023621.4E-17219310IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MYEGNSSFIV HIFNLSTAEL NYQSAIRNHI EGPCYANYNH IFEEMEDVDS IDLSDLSPAY  60
LASGAMQNKG FAGSGDQLTP GKSHTPALQN LFNGGSKLNR VNWGDGGSAY SSKAANSQGT  120
QSTRDIGVQF NAVEFKRSTE ELKLRYSNEE SVNKTAKKKR KSESQGEEPS GENEEEAEMR  180
YRFYESASAR KRTVTAEERE RAINASKAFE PTNPFCRVVL RPSYLYRGCI MYLPSCFAEK  240
NLNGVSGFIK LQLSNGRQWS VRCLYRGGRA KLSQGWFEFT VENNLGEGDV CVFELLRTKE  300
VELQVTVFRV TEDAGLLHTP LAVQQQSQNM SHTKLLNPHL QHRVSSTVKL IRN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-7218231215144B3 domain-containing transcription factor VRN1
4i1k_B2e-7218231215144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G011300.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153154.10.0hypothetical protein PHAVU_003G011300g
TrEMBLV7C7270.0V7C727_PHAVU; Uncharacterized protein
STRINGXP_007153153.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-83B3 family protein