PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G017000.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 650aa    MW: 71384.4 Da    PI: 6.5551
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G017000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.84.8e-28206259155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Phvul.003G017000.1 206 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 259
                         79*******************.********************************8 PP
2Response_reg74.83.4e-25241321109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+ + +++++q+  + +y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++++ ++ + + + 
  Phvul.003G017000.1  24 VLVVDDDATTLRIIEQMSIRCRY-RVTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMKG 112
                         89*********************.*******************************************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ +eel++
  Phvul.003G017000.1 113 IRHGACDYLIKPVREEELRN 132
                         ******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.28E-3321145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.5E-3821144No hitNo description
SMARTSM004484.9E-2922134IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.38723138IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2124133IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.05E-2525137No hitNo description
PROSITE profilePS5129410.504203262IPR017930Myb domain
SuperFamilySSF466891.67E-19203263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.3E-30203264IPR009057Homeodomain-like
TIGRFAMsTIGR015573.0E-24206259IPR006447Myb domain, plants
PfamPF002492.5E-7208257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAPSRSGGDV CKGGAPEFPA GLRVLVVDDD ATTLRIIEQM SIRCRYRVTT CTEATVALNL  60
LRERKGCFDV VLSDVHMPDM DGYKLLEHVG LEMDLPVIMM SGDSTTSAVM KGIRHGACDY  120
LIKPVREEEL RNIWQHVVRK IWNENKEHDN SGSMEDSDWN KRGNDDTEYT SSVADAAEVV  180
KGPKKRSSLK EEDIELESDD PATSKKPRVV WSVELHQQFV SAVNQLGLDK AVPKRILELM  240
NVPGLTRENV ASHLQKFRLY LKRLSGVAQQ QNGMLNAVPG TIESKLSATG RFDIQALAAA  300
GHVPPETLAA LHAELLGCPA SNIMSTMDQA TLLQASIGLK HSHAEHAVAY GQPLVKRPNI  360
GTDFLPSVLT ANDVSSGYGA WPSSNNTMGS VRPNNSVERV GTQNNNILMD ILDHQQRQLP  420
QQKQQHHHQQ KQQQQLRQQP LIPDQSCSIN VQPSCLVVPS QSSDTLQAVN SSASVDQNCS  480
FGRNAIIDYS LYSQKSNNSV SASQFPSSDT KAQGVLYGYT TPSTCSMSSI NGNIQQLQNS  540
TLTFGAARPL PSPLPMSDRQ DPYGFKSGDS FDQVCLRNIG FIGKGICIPN RFVQNEIESS  600
VSDFSKMKVN VDSSGNTLKE EPNFINMQKV SRPIVERYQS CDHSSVFTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-22205265464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G017000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153220.10.0hypothetical protein PHAVU_003G0170001g, partial
SwissprotA2XE311e-145ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-145ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLV7C5200.0V7C520_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007153220.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-113response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]