PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G033400.1
Common NamePHAVU_003G033400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 452aa    MW: 52303.3 Da    PI: 9.8528
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G033400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.4e-16893899
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                          +l++g+l lpk f+++hg    +   + l++++g +W+++    +++g++++++GWkeF+    L+ g  + F+++g++ f   v++f++
  Phvul.003G033400.1  8 RPNLAHGILNLPKMFTRKHGDGMSN--PVFLRSPDGTEWKIYW--VRSDGEIWFQNGWKEFATYYSLDHGHLLFFEYQGTTHF--QVHIFDN 93
                        46788999***********766444..5***************..********************************998888..9999997 PP
2B356.35.7e-18221311198
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 
                         ff   ++++  k+  l +p +f+e++ ++++e   + le ++gr+W v +  +  +    +++GWk+F+++n+L++gD++vF++++r ++ 
  Phvul.003G033400.1 221 FFLLVMKESLIKRYYLKIPPHFVEKYLKNTRE--VVNLEVLDGRTWPVIY--SAPR----ISGGWKKFASENNLNVGDVCVFEMIKRiQGL 303
                         66777899999999************766555..7***************..4444....89*************************9*** PP

                         ..EEEEE- CS
                  B3  91 elvvkvfr 98 
                          + v++fr
  Phvul.003G033400.1 304 AFIVSIFR 311
                         *****998 PP
3B360.92.2e-19353448199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         ff v++ps  ++++ l++p  fa+++ +k   ++ +++ + +++ W vk+ ++++s++  +++GW  F+++n+Lk gD++vF+l++r++++
  Phvul.003G033400.1 353 FFMVTLPSKENTTRYLCVPIYFARKYLIK--FNQNVMMIQFRNKLWPVKF-VCNSSSSAKFSAGWALFARENNLKPGDICVFELVNRKDAT 440
                         6778889*******************666..4557***************.789999999******************************* PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                         lvv+vfr+
  Phvul.003G033400.1 441 LVVHVFRS 448
                         ******96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100172.36E-15192No hitNo description
Gene3DG3DSA:2.40.330.101.8E-21194IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.661194IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-21194IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-17294IPR003340B3 DNA binding domain
PfamPF023628.5E-13993IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-21215311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-22216311IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-20220311No hitNo description
PROSITE profilePS5086313.817221313IPR003340B3 DNA binding domain
SMARTSM010192.8E-14221313IPR003340B3 DNA binding domain
PfamPF023621.5E-15221312IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-19345449IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-21347449IPR015300DNA-binding pseudobarrel domain
CDDcd100172.10E-16353447No hitNo description
SMARTSM010194.3E-11353449IPR003340B3 DNA binding domain
PROSITE profilePS5086314.41353449IPR003340B3 DNA binding domain
PfamPF023623.4E-17353448IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
HFCKIILRPN LAHGILNLPK MFTRKHGDGM SNPVFLRSPD GTEWKIYWVR SDGEIWFQNG  60
WKEFATYYSL DHGHLLFFEY QGTTHFQVHI FDNSALEIDY PSHTTHCRKE NLVHISDDSN  120
ELLLEQLSCQ NTRVKPTLSS PQPCKKMKNS ITTNVVRSPN LVHLHQHVQT KSPSIQEEKS  180
IKQKLHEVEG KHAFNSECSK VEQLTSTALK KAITFRPEHP FFLLVMKESL IKRYYLKIPP  240
HFVEKYLKNT REVVNLEVLD GRTWPVIYSA PRISGGWKKF ASENNLNVGD VCVFEMIKRI  300
QGLAFIVSIF RGAEEPSFPI SQVKDFQLES DFKSKILTRA HKEASKFKSE NPFFMVTLPS  360
KENTTRYLCV PIYFARKYLI KFNQNVMMIQ FRNKLWPVKF VCNSSSSAKF SAGWALFARE  420
NNLKPGDICV FELVNRKDAT LVVHVFRSHG N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1520844734144B3 domain-containing transcription factor VRN1
4i1k_B8e-1520844734144B3 domain-containing transcription factor VRN1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G033400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153416.10.0hypothetical protein PHAVU_003G033400g, partial
TrEMBLV7C8110.0V7C811_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007153416.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-38B3 family protein