PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G035900.1
Common NamePHAVU_003G035900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 220aa    MW: 24001.7 Da    PI: 8.303
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G035900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.81.9e-2941081100
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C++lr++C++dCv++p++      ++q++++ ++ k++G++ +l+l++a+p+++r+d+++sl+yeA+ r+ +P  G+vg+++++++ 
  Phvul.003G035900.1   4 SCNGCRILRKGCTEDCVIRPCLewinsSEAQANATLFLSKFYGRAGLLNLINAAPQHHRTDVFKSLMYEACGRIMNPTFGSVGLFWSGEWA 94 
                         6*********************9998777889*********************************************************** PP

              DUF260  87 leqlkaelallkee 100
                          +q++++++l++++
  Phvul.003G035900.1  95 QCQAAVDAVLAGSQ 108
                         *******9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.4833109IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-244103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MKISCNGCRI LRKGCTEDCV IRPCLEWINS SEAQANATLF LSKFYGRAGL LNLINAAPQH  60
HRTDVFKSLM YEACGRIMNP TFGSVGLFWS GEWAQCQAAV DAVLAGSQIN VMTTSHSQVM  120
VAHGSEHASK LLDIRHVVKD ANMDKVKGKS KKPNRTENVM MPMSHVGLVN SATLWNPILS  180
HEPRRLEGGG EEIVRAMLLS QDKPSINGGN NIDLELTLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G035900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-77AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153445.11e-164hypothetical protein PHAVU_003G035900g
TrEMBLV7C5M21e-163V7C5M2_PHAVU; Uncharacterized protein
STRINGXP_007153445.11e-164(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-65LOB domain-containing protein 41