PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G037600.1

Common Name

PHAVU_003G037600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 336aa MW: 36837.6 Da PI: 6.6382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G037600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.1	5e-16	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L +++eY+++Lq Phvul.003G037600.1 46 RSKHSVTEQRRRSKINERFQILRDLIPHS----DQKRDTASFLLEVIEYVQYLQ 95 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.57E-18	42	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.6E-23	43	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.044	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-13	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.74E-15	46	99	No hit	No description
SMART	SM00353	4.6E-12	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MRAGKGNQEE DEYDEEDFGS SKKQSTSSAP NTNKDGKAID KASAIRSKHS VTEQRRRSKI 60 NERFQILRDL IPHSDQKRDT ASFLLEVIEY VQYLQEKVQK YEGSYQGWGQ EPSKLMPWRN 120 SHWRVQSFAG QPTTIKNGLG TLSPFPGKFD ESNVSMSPTM LSGTQNTIDP DQSRDIVNKT 180 AERQPDLVSK GIPLPLPMHA NMSVPARSDG VLAHPLQGTV SDAQSTECPT TSEPQNQQDE 240 LTVEGGTISI SSVYSQGLLN NLTQALQSAG LDLSQASISV QINLGKRANN GLSCGTSSPK 300 NHDNPPSNNQ TIAHFRDAGS GEDSDQTQKR MKTYK*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G037600.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093525	0.0	BT093525.1 Soybean clone JCVI-FLGm-24O3 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007153463.1	0.0	hypothetical protein PHAVU_003G037600g
Swissprot	Q9CAA4	1e-117	BIM2_ARATH; Transcription factor BIM2
TrEMBL	V7C5J2	0.0	V7C5J2_PHAVU; Uncharacterized protein
STRING	XP_007153463.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1730	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-119	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Phvul.003G037600.1
Entrez Gene	18633801

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]