PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G039800.1
Common NamePHAVU_003G039800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family YABBY
Protein Properties Length: 174aa    MW: 18978.5 Da    PI: 9.6084
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G039800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY152.24.8e-47101562163
               YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                         d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +  + +  + +h           +l    + + sn +k +++
  Phvul.003G039800.1  10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPNSQNQSIDH-----------TLSL--QGFYSNAKKGQAS 87 
                         77899*************************************9866544444444444443...........3322..3333333332222 PP

               YABBY  93 stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                         s+  ss   +++++  +p++   v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa f
  Phvul.003G039800.1  88 SS-SSSP--TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARF 156
                         22.2222..244555666666669**********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.2E-5614156IPR006780YABBY protein
SuperFamilySSF470956.41E-9100154IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.4E-5109155IPR009071High mobility group box domain
CDDcd013904.28E-6117153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNHDDKLTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP  60
PNSQNQSIDH TLSLQGFYSN AKKGQASSSS SSPTTSNESV SPKAASFVVK PPEKKHRLPS  120
AYNRFMKEEI QRIKAANPEI PHREAFSAAA KNWARFIPNS PTSSVSASKV NTD*
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G039800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-177KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153487.11e-126hypothetical protein PHAVU_003G039800g
SwissprotQ76EJ02e-66YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLV7C9811e-125V7C981_PHAVU; Uncharacterized protein
STRINGXP_007153487.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.13e-66YABBY family protein