PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G045600.1
Common NamePHAVU_003G045600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 237aa    MW: 27026.7 Da    PI: 9.159
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G045600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.19.9e-5591341128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+v+yL++++++k++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfFs+r++ky++g r+nrat sgyWkatg+dk+
  Phvul.003G045600.1   9 LPPGFRFHPTDEELIVYYLCNQATSKPCPA-SIIPEVDIYKFDPWELPEKTDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKA 98 
                         79****************************.89***************99999************************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++s +++++g+kk Lvfykg+ pkg ktdW+mheyrl
  Phvul.003G045600.1  99 IYS-GSKHIGVKKALVFYKGKPPKGLKTDWIMHEYRL 134
                         ***.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-665161IPR003441NAC domain
PROSITE profilePS5100560.6479161IPR003441NAC domain
PfamPF023657.5E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEGRTSSVLP PGFRFHPTDE ELIVYYLCNQ ATSKPCPASI IPEVDIYKFD PWELPEKTDF  60
GENEWYFFSP RERKYPNGVR PNRATVSGYW KATGTDKAIY SGSKHIGVKK ALVFYKGKPP  120
KGLKTDWIMH EYRLIGSRRQ TNRQMGSMRL DDWVLCRIYK KKNVGKSLEA KEDYPIAQIN  180
LTPPNNGTEQ EVVKFPRTSS LTHLLDMDYL GPISHILSDA SYTSTFDFQL NTVNGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-72516613170NO APICAL MERISTEM PROTEIN
1ut4_B5e-72516613170NO APICAL MERISTEM PROTEIN
1ut7_A5e-72516613170NO APICAL MERISTEM PROTEIN
1ut7_B5e-72516613170NO APICAL MERISTEM PROTEIN
3swm_A5e-72516616173NAC domain-containing protein 19
3swm_B5e-72516616173NAC domain-containing protein 19
3swm_C5e-72516616173NAC domain-containing protein 19
3swm_D5e-72516616173NAC domain-containing protein 19
3swp_A5e-72516616173NAC domain-containing protein 19
3swp_B5e-72516616173NAC domain-containing protein 19
3swp_C5e-72516616173NAC domain-containing protein 19
3swp_D5e-72516616173NAC domain-containing protein 19
4dul_A5e-72516613170NAC domain-containing protein 19
4dul_B5e-72516613170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G045600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0287690.0DQ028769.1 Glycine max NAC domain protein NAC1 (NAC1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153556.11e-178hypothetical protein PHAVU_003G045600g
SwissprotK4BWV21e-116NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLV7C8E11e-177V7C8E1_PHAVU; Uncharacterized protein
STRINGXP_007153556.11e-178(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-117NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]