PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G048000.1
Common NamePHAVU_003G048000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 279aa    MW: 31262.6 Da    PI: 8.4817
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G048000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-1283130455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h   Er RR+++++ f  L  llP++   p  K +K++++ +Av YIksL+
  Phvul.003G048000.1  83 MHIWTERERRKKMKNMFTALHALLPHL---P-SKADKSTVVDEAVSYIKSLE 130
                         56678*********************6...3.8*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.68E-1677142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.29E-1177134No hitNo description
PROSITE profilePS5088814.32979129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1682142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-984130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-987135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00445206239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVLISEDEGL LDMNFLWENH WWDPSDSDNS RETKGNTKAE KQKNEKDEGV TMKKKKKRNH  60
GELKKITSAE GKGEKSRESD HEMHIWTERE RRKKMKNMFT ALHALLPHLP SKADKSTVVD  120
EAVSYIKSLE RTVEKLEKQK EERLQCGSTF MTAQGLSSNY NFSNAIVGTS SNALLFPAQR  180
PVAFHKTWAS SNIVLNVFGD EAQFGICAAH KPGLMSSVAL VLDKYNIELL SAHVSCIGNG  240
NAIMIQAHGK RASHQMLHAN SVEEIYRLAA GEILLWIA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15264KKKKKRNHGELKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G048000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150347e-84AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153586.10.0hypothetical protein PHAVU_003G048000g
TrEMBLV7C8G90.0V7C8G9_PHAVU; Uncharacterized protein
STRINGXP_007153586.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-26bHLH family protein