PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G060700.2
Common NamePHAVU_003G060700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 459aa    MW: 51395.2 Da    PI: 8.7512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G060700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13296339755
                         HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           Er+RR++i++++++Lr+l+Pk      +K++ a+iL  Av+YIk+Lq
  Phvul.003G060700.2 296 VTERNRRKKIKNGLFTLRSLVPKI-----TKMDRAAILADAVDYIKELQ 339
                         57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.5E-1410148IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.7E-16289356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.627289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.01E-12291341No hitNo description
SMARTSM003538.8E-14295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-11296339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-16296353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MSGLGVVEWL RPLVETNIWD YVVVWKYGDD PTRFIEWIGC CCRGSCSVNL GVMSKEEKGE  60
VCHLAPICRD KYLQHHVRTK ACEALAQLPF ALSLYSGVHG EVAISQQSRW LTKDSIGTQV  120
LIPIVGGLIE LFTEKLIPMD MNIIELITAH GCVSLKQEAI SAQSYTCLNI IEHLPLTEQY  180
SHRWLPHMSA TLTPSIHQPA TKQCTSHPSI EGPPSGSNPS IEEPSFDSKF VGLIPDEHLK  240
QSAKMSPIPK TKMSKYNKTS GKQQRGLSSH CSDGEEDKSK LVKEPQKEGY QAKNLVTERN  300
RRKKIKNGLF TLRSLVPKIT KMDRAAILAD AVDYIKELQT QMKELKDEVR ALEVQDREKN  360
TPQPRKAAVN EQEGTRSSTL NQSSSDCTKK MPMEKQGRFS KLMEAIHSIG LQVASANIMT  420
FDAKVLNILT VKATNKDIHP TKLKEYLIQK TSDDRQSR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G060700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153736.10.0hypothetical protein PHAVU_003G060700g
TrEMBLV7C8Z20.0V7C8Z2_PHAVU; Uncharacterized protein
STRINGXP_007153735.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.12e-62bHLH family protein