PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G061800.1

Common Name

PHAVU_003G061800g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

YABBY

Protein Properties

Length: 238aa MW: 26412.3 Da PI: 7.8214

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G061800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	187	1e-57	52	207	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvek 88 ++f+ +eq+Cyv+C+fC+t l+vsvP +s ++vvtvrCGhCtsllsvn++k+s +lla+ hl ++++e+ +++ ++ Phvul.003G061800.1 52 HLFDLPEQICYVECGFCTTTLMVSVPCSSFSMVVTVRCGHCTSLLSVNMKKTSfvpfHLLASLTHL--------EPSKGSSEDGANKTLKS 134 7899********************************************9986666677777763........33344444433333333 PP YABBY 89 eesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 ++++ ++ s+ e++++p+ + v++PPekrqr Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP+ Phvul.003G061800.1 135 YNAS-----RMNYSDCEEQNMPQLSNvVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPKMAHKEAFSTAAKNWANFPP 207 2222.....22335678888999888799**********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.6E-62	57	208	IPR006780	YABBY protein
SuperFamily	SSF47095	2.88E-9	153	209	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.1E-6	158	209	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MEKGREKLSL SAINSYLCTM SYIFNLSLPL SLPLSFSYTS NTCSTAMSTL NHLFDLPEQI 60 CYVECGFCTT TLMVSVPCSS FSMVVTVRCG HCTSLLSVNM KKTSFVPFHL LASLTHLEPS 120 KGSSEDGANK TLKSYNASRM NYSDCEEQNM PQLSNVVNKP PEKRQRTPSA YNRFIKEEIK 180 RLKAENPKMA HKEAFSTAAK NWANFPPSQC KGEADSCKLV DLDCHVESFN APEVNII*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G061800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	2e-52	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007153748.1	1e-176	hypothetical protein PHAVU_003G061800g
Swissprot	Q9LDT3	3e-63	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	V7C6F6	1e-175	V7C6F6_PHAVU; Uncharacterized protein
STRING	XP_007153748.1	1e-176	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	1e-65	YABBY family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G061800.1
Entrez Gene	18634051

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]