PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G069000.2
Common NamePHAVU_003G069000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 402aa    MW: 45177.3 Da    PI: 9.5334
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G069000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.35.3e-1569128155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GV++++++gr++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Phvul.003G069000.2  69 SRFRGVSRHRWTGRFEAHLWDkGTWNPtqkKKgKQVYLGAYNDEEAAARAYDLAALKYWG 128
                         789******************888855566447*************************98 PP
2AP252.31.4e-16168219155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  Phvul.003G069000.2 168 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 219
                         89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.29E-1669138IPR016177DNA-binding domain
PfamPF008473.9E-1169128IPR001471AP2/ERF domain
PROSITE profilePS5103219.55970136IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-1570137IPR001471AP2/ERF domain
SMARTSM003804.6E-2570142IPR001471AP2/ERF domain
PRINTSPR003672.9E-57182IPR001471AP2/ERF domain
PfamPF008475.0E-12168219IPR001471AP2/ERF domain
CDDcd000181.61E-25168229No hitNo description
SuperFamilySSF541716.47E-18168229IPR016177DNA-binding domain
PROSITE profilePS5103218.953169227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-18169228IPR001471AP2/ERF domain
SMARTSM003802.7E-26169233IPR001471AP2/ERF domain
PRINTSPR003672.9E-5209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MELAPVKSEL SPRSHRLLVI DGSEVIATKC VKRRRRGSSM SVLGGNEQQG EKLEEHKQLG  60
TATTVKRSSR FRGVSRHRWT GRFEAHLWDK GTWNPTQKKK GKQVYLGAYN DEEAAARAYD  120
LAALKYWGTS TFTNFPVSDY DKEIEIMKTV TKEEYLASLR SGFSRGVSKY RGVARHHHNG  180
RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYRGI NAVTNFDLST YIRWLRPGTH  240
PIASHDQKPS TDPQPFATSK SMQTRGNIDV SNSNMHSFSS AELDSTKKQD FSKYINPLSP  300
CNKPSSPTAL GLLLKSTVFR ELMQRNLNSS SEEAEEVELK YPQEGNDANG GIYYSDNTSN  360
SYFCSSLINR LPNLESPEET SLPVYHGTVQ SGWSSSFNMS N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194102PTQKKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G069000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153838.10.0hypothetical protein PHAVU_003G069000g
TrEMBLV7C6N90.0V7C6N9_PHAVU; Uncharacterized protein
STRINGXP_007153839.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.31e-79AP2 family protein