PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G073400.1
Common NamePHAVU_003G073400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WOX
Protein Properties Length: 387aa    MW: 43105.1 Da    PI: 8.3021
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G073400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.12.7e-1753113257
                         T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                         ++R+++++eq+++Le+ F++   +p ++e++++  +l    ++ +++V++WFqNr+ + k+
  Phvul.003G073400.1  53 KSRWNPKPEQIRILEAIFNSgMVNPPRDEIRKIRVQLqeygQVGDANVFYWFQNRKSRSKH 113
                         89*****************99*************************************995 PP
2Wus_type_Homeobox111.54.6e-3652114264
   Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                         +++RW+P+peQi+iLe++++sG+++P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++k
  Phvul.003G073400.1  52 PKSRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKHK 114
                         689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-735112IPR009057Homeodomain-like
SuperFamilySSF466895.99E-1246117IPR009057Homeodomain-like
PROSITE profilePS5007110.17149114IPR001356Homeobox domain
SMARTSM003895.7E-851118IPR001356Homeobox domain
CDDcd000862.27E-752114No hitNo description
PfamPF000466.7E-1553113IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSSSNKHWPS MFKSKPCNSH NQWQHEDNSS VLSTGCQRSP YTPGSEERTP EPKSRWNPKP  60
EQIRILEAIF NSGMVNPPRD EIRKIRVQLQ EYGQVGDANV FYWFQNRKSR SKHKLRHIQN  120
SKNQNTETQP NSVSLSQITP PSTSSSSSDK SSSKELVHPN GFSFGFSNVN DAVPNSPTAS  180
VNQTYFHSHN NTDLLPPAIE SLYFPLNNNG QGVIVNNTIT THGFSVPQFS NNIMQSQPQC  240
QPNVGPSSTL FLNEIMNHGT FSKRDQDQEK ALKLMHRQQL SFPLTSPSTT TLVPSISAPP  300
CPITQLQGVG GEVTADRGKC IVFINDVAFE VMKGPFNVRQ AFGDEAVLIH SSGPVPTDDW  360
GTTLHPLQHG AYYYLVCTFL KHCNFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G073400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007153888.10.0hypothetical protein PHAVU_003G073400g
TrEMBLV7C6T60.0V7C6T6_PHAVU; Uncharacterized protein
STRINGXP_007153888.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38243361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-57homeobox-3