PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G097500.1

Common Name

PHAVU_003G097500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Trihelix

Protein Properties

Length: 295aa MW: 33089.5 Da PI: 9.9679

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G097500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.1	8.5e-22	23	113	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W+ +e+laLi+a+r+++ +l+rg+lk+++W+ev++++ ++p+qC++k+e+l+kry+ + +++++ s+ s++++f+ ++ Phvul.003G097500.1 23 CWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVanrcPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLpVSRFNSSWVHFKLMD 113 7********************************99977666677799*********************97799999****997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-21	22	115	No hit	No description
PROSITE profile	PS50090	6.121	24	84	IPR017877	Myb-like domain
SMART	SM00595	3.5E-11	31	120	IPR006578	MADF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MPSSPSPSPS PAPPSSRRLP PPCWSPDETL ALIDAYRDKW YSLGRGNLKA THWQEVADAV 60 ANRCPNASPP KTPVQCRHKM EKLRKRYRTE IQRARSLPVS RFNSSWVHFK LMDSMEKGPS 120 PVKPEHDSDS DNDDDDNDDD QDLYQEISHN GHTRSLNKLY RNGFPGVGAG GFRIRIPTGM 180 APAQPGSGSK LFGKVGNQKF SPNLNQNPNP NFGKKRERDP VGEMVAAIKV LGDGFVRMEQ 240 MKMEMAREIE SMRMEMEMKR TEMILESQQR IVEAFAKAVS EKKKAKTVSS PQQP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G097500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007154189.1	0.0	hypothetical protein PHAVU_003G097500g
TrEMBL	V7CA26	0.0	V7CA26_PHAVU; Uncharacterized protein
STRING	XP_007154189.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4638	28	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	6e-63	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G097500.1
Entrez Gene	18634430