PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G101300.1
Common NamePHAVU_003G101300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 211aa    MW: 23399 Da    PI: 8.498
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G101300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.81.4e-0661104855
                         HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +Er RR+++ + f +L++ +P  +     +  +   i  +++ YIk+L+
  Phvul.003G101300.1  61 IERERRSKMTQMFTQLQTSVPGlL-----PQATREVIINETIGYIKELE 104
                         8*********************55.....6788899*********9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.3453103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-1059118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-459109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1161117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-661108No hitNo description
PfamPF000102.7E-461104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MQGDTTEKET EETHSTMPPL SEIPPSSFLH PSTIAENTAN TTSRKRVKRI MGQTNCQSLN  60
IERERRSKMT QMFTQLQTSV PGLLPQATRE VIINETIGYI KELEKKKQRL EELKETMKGV  120
EESAVECGNS NRNCSIMVTV SANVAFFGIQ WVPRPGLVTQ ILKVFCNHQA DILAANVSVN  180
NGKLILAITA LVQNNGKCVV ENIKREIMGL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G101300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-136AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154231.11e-154hypothetical protein PHAVU_003G101300g
TrEMBLV7CAD81e-152V7CAD8_PHAVU; Uncharacterized protein
STRINGXP_007154231.11e-153(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF143301314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-07bHLH family protein