PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G102800.1
Common NamePHAVU_003G102800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 513aa    MW: 56278.1 Da    PI: 10.4237
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G102800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.5e-075590340
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                         W +eE   +++a +++G++ Wk++a  +  +R+++++
  Phvul.003G102800.1 55 QWNKEELGHFYEAYRKYGKD-WKKVALAVR-NRSAEMV 90
                        6*****************99.*********.***9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-95299IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-45591IPR009057Homeodomain-like
PfamPF002494.3E-65590IPR001005SANT/Myb domain
CDDcd001673.11E-45690No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MAPSRKSRSV NKRFSSVHET ASSKDKITEN GSKNRLKASP GIQKKRRLAD MLGPQWNKEE  60
LGHFYEAYRK YGKDWKKVAL AVRNRSAEMV EALYTMNRAY LSLPEGTASV VGLIAMMTDH  120
YSVLGGSDSG KESNDDAEIS KKSQKRLRGK HPSDNKPLDG HLSDHSQSHS VASGDGCLSL  180
LKKRHSGIRP HAVRKRTPRV PISYSIGKDI GERFFSSVRQ GSKQMVDTND VTHKIALALT  240
EASQRGGSSK NSGSPEKKFL SSPGLKSGKK HSKSEKAGAK FCSSELDDGS SELSLGSTEG  300
NNEDYSRKTI HRSGREITGR GRNQEKKIKQ YGKNLEPEGN LNKHLNDIKE ASSGTDDGKI  360
FIKSSFNTDF VDAKNARSSY KGSRTKSKKL LLEKDEGSAF NALKTLADLS LMLPVTNPDT  420
ESSAQFKEGN HDVVGESKME THKVFPKIES TASSKFSKVF SDNGAVVPEA EGTLQLNAGF  480
RKRKQKSFNL KNDETHTGSH LSGSQKTKVC NY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G102800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-165AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154247.10.0hypothetical protein PHAVU_003G102800g
TrEMBLV7CBI00.0V7CBI0_PHAVU; Uncharacterized protein
STRINGXP_007154247.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.22e-92DNA binding