PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G103500.1
Common NamePHAVU_003G103500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YB
Protein Properties Length: 153aa    MW: 17328.6 Da    PI: 6.0053
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G103500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB168.58e-5339134297
               NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         reqd +lPianv+rimk++lP nakisk++ket+qecvsefisfvtseas+kc++e+rkt+ngdd++wal++lGf+dy+epl+ yl++yre
  Phvul.003G103500.1  39 REQDCLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLHRYRE 129
                         89***************************************************************************************** PP

               NF-YB  93 legek 97 
                         +e ++
  Phvul.003G103500.1 130 VEVDR 134
                         **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.0E-5132149IPR009072Histone-fold
SuperFamilySSF471131.16E-3841150IPR009072Histone-fold
PfamPF008085.0E-2745108IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.1E-187290No hitNo description
PROSITE patternPS0068507591IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.1E-1891109No hitNo description
PRINTSPR006151.1E-18110128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MLSWSIKRVV QLLELNSFLP KMVDNVGGSS SNPENSGIRE QDCLLPIANV GRIMKQILPP  60
NAKISKESKE TMQECVSEFI SFVTSEASEK CRKERRKTVN GDDICWALGS LGFDDYAEPL  120
RRYLHRYREV EVDRSAIQER GNSPSKDKDN EF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B6e-4338129192Transcription factor HapC (Eurofung)
4g92_B6e-4338129192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G103500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154257.11e-110hypothetical protein PHAVU_003G103500g
SwissprotO822484e-53NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBLV7CBI91e-108V7CBI9_PHAVU; Uncharacterized protein
STRINGXP_007154257.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80532131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47810.12e-55nuclear factor Y, subunit B5
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]