PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G107900.1
Common NamePHAVU_003G107900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 379aa    MW: 43617.1 Da    PI: 10.4608
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G107900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.32.8e-163476349
                 AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                        y+G+r+++ +g+W+AeIrdp++     r +lg+f ta+eAa+a++ a
  Phvul.003G107900.1 34 YRGIRQRP-WGKWAAEIRDPRK---GLRLWLGTFATAQEAARAYDDA 76
                        9*******.**********954...3*******************88 PP
2AP251.32.8e-16105147349
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                         y+G+r+++ +g+W+AeIrdp++     r +lg+f ta+eAa+a++ a
  Phvul.003G107900.1 105 YRGIRQRP-WGKWAAEIRDPRK---GLRLWLGTFATAQEAARAYDDA 147
                         9*******.**********954...3*******************88 PP
3AP251.32.8e-16176218349
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                         y+G+r+++ +g+W+AeIrdp++     r +lg+f ta+eAa+a++ a
  Phvul.003G107900.1 176 YRGIRQRP-WGKWAAEIRDPRK---GLRLWLGTFATAQEAARAYDDA 218
                         9*******.**********954...3*******************88 PP
4AP257.72.9e-18247295355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+G+r+++ +g+W+AeIrdp++     r +lg+f ta+eAa+a++ a+++++g
  Phvul.003G107900.1 247 YRGIRQRP-WGKWAAEIRDPRK---GLRLWLGTFATAQEAARAYDDAALRIRG 295
                         9*******.**********954...3************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.47E-163378IPR016177DNA-binding domain
SMARTSM003804.6E-213386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-243378IPR001471AP2/ERF domain
PROSITE profilePS5103219.4543378IPR001471AP2/ERF domain
CDDcd000181.22E-213478No hitNo description
PRINTSPR003671.3E-103445IPR001471AP2/ERF domain
PfamPF008475.8E-103476IPR001471AP2/ERF domain
PRINTSPR003671.3E-105672IPR001471AP2/ERF domain
SMARTSM003804.6E-21104157IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-16104149IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-24104149IPR001471AP2/ERF domain
PROSITE profilePS5103219.454104149IPR001471AP2/ERF domain
CDDcd000181.22E-21105149No hitNo description
PfamPF008475.8E-10105147IPR001471AP2/ERF domain
SMARTSM003804.6E-21175228IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-16175220IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.7E-24175220IPR001471AP2/ERF domain
PROSITE profilePS5103219.454175220IPR001471AP2/ERF domain
CDDcd000181.22E-21176220No hitNo description
PfamPF008475.8E-10176218IPR001471AP2/ERF domain
PROSITE profilePS5103224.263246303IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-21246304IPR016177DNA-binding domain
SMARTSM003805.1E-35246309IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-31246304IPR001471AP2/ERF domain
CDDcd000183.38E-28247303No hitNo description
PfamPF008477.1E-12247295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MCGGAIISDF VDVEDACEKV KKKRVVTRVR KNAYRGIRQR PWGKWAAEIR DPRKGLRLWL  60
GTFATAQEAA RAYDDAIISD FVDVEDACEK VKKKRVVTRV RKNAYRGIRQ RPWGKWAAEI  120
RDPRKGLRLW LGTFATAQEA ARAYDDAIIS DFVDVEDACE KVKKKRVVTR VRKNAYRGIR  180
QRPWGKWAAE IRDPRKGLRL WLGTFATAQE AARAYDDAII SDFVDVEDAC EKVKKKRVVT  240
RVRKNAYRGI RQRPWGKWAA EIRDPRKGLR LWLGTFATAQ EAARAYDDAA LRIRGDKAKL  300
NFPRHHHPPP DNNPCLSPEF TQPCYQPTFN NTDPLLANHI SNLESFLGLE PEQLPMQPLP  360
LPEWDPLHDV VFPNRHLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2034303663ATERF1
3gcc_A4e-2034303663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G107900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-110AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154310.10.0hypothetical protein PHAVU_003G107900g
SwissprotP427366e-32RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3
TrEMBLV7C8520.0V7C852_PHAVU; Uncharacterized protein
STRINGXP_007154310.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.12e-23ERF family protein
Publications ? help Back to Top
  1. Bueso E, et al.
    The lithium tolerance of the Arabidopsis cat2 mutant reveals a cross-talk between oxidative stress and ethylene.
    Plant J., 2007. 52(6): p. 1052-65
    [PMID:17931347]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen YC, et al.
    Root defense analysis against Fusarium oxysporum reveals new regulators to confer resistance.
    Sci Rep, 2014. 4: p. 5584
    [PMID:24998294]
  4. Deslauriers SD,Alvarez AA,Lacey RF,Binder BM,Larsen PB
    Dominant gain-of-function mutations in transmembrane domain III of ERS1 and ETR1 suggest a novel role for this domain in regulating the magnitude of ethylene response in Arabidopsis.
    New Phytol., 2015. 208(2): p. 442-55
    [PMID:25988998]
  5. Bui LT,Giuntoli B,Kosmacz M,Parlanti S,Licausi F
    Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana.
    Plant Sci., 2015. 236: p. 37-43
    [PMID:26025519]
  6. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  7. Liu W, et al.
    Ethylene response factor AtERF72 negatively regulates Arabidopsis thaliana response to iron deficiency.
    Biochem. Biophys. Res. Commun., 2017. 491(3): p. 862-868
    [PMID:28390898]
  8. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]