PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G110800.1
Common NamePHAVU_003G110800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 129aa    MW: 14185 Da    PI: 11.1305
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G110800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000162345123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C +C + Fs++  L  H++ H
  Phvul.003G110800.1 23 FHCRYCRRQFSNSQALGGHQNAH 45
                        78******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-5949IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.06E-61950No hitNo description
PROSITE profilePS5015711.4892350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MKLFGFSFNL KPAISCEDGA KRFHCRYCRR QFSNSQALGG HQNAHRRERA KLAQFKYLLH  60
LRQHHGHSFK PPSNNGAKGS SLHHPNASPN VSVGSATTAA SFQFHGAAGT LLLQAPPRDD  120
QVDLNLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G110800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-107AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154344.16e-90hypothetical protein PHAVU_003G110800g
TrEMBLV7CAF61e-88V7CAF6_PHAVU; Uncharacterized protein
STRINGXP_007154344.12e-89(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.19e-13zinc finger protein 7