PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G116300.1
Common NamePHAVU_003G116300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 399aa    MW: 43379 Da    PI: 6.2356
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G116300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.92.1e-33209267159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK vk+s++prsYYrCt+a C vkk+vers+edp+vv++tYeg+H+h+
  Phvul.003G116300.1 209 LDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPSVVVTTYEGQHTHP 267
                         59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-35194269IPR003657WRKY domain
SuperFamilySSF1182901.83E-29201269IPR003657WRKY domain
PROSITE profilePS5081132.386204269IPR003657WRKY domain
SMARTSM007749.9E-40209268IPR003657WRKY domain
PfamPF031063.6E-27210267IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEEKREKEAN SKSSSTMANS VAFSDEIPNM TMTMSFPFSP AFSTIFDIMP PLPPPPSSSF  60
SHDPKAPNFA FLDLLAVPDY TPSLFDWPQN TALTSPPPPP PPTQITHPLP SPASSNVPDG  120
GSEVLNTPPS PNYSSISSSS NEAAAAAANK ATGNEDEAEE DETTTDAAGK GEDQDQDKSK  180
NQLKPKKKHQ KKPREPRFAF MTKSEVDHLD DGYRWRKYGQ KAVKNSPHPR SYYRCTTAAC  240
GVKKRVERSS EDPSVVVTTY EGQHTHPCPA TSRASLGFLH SEPSVLGPTS GLFMLPQQHQ  300
QFRHDQAQAQ AQAQAQVAML YNSTTTSSPS SHLNVVNSAT CVNNYANASS LSGFFQCQEN  360
ERGFAPSSMR GPHQGLFNGL LQDIVPTQMM SEERGDRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-272022701078Probable WRKY transcription factor 4
2lex_A2e-272022701078Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G116300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154400.10.0hypothetical protein PHAVU_003G116300g
TrEMBLV7C8D00.0V7C8D0_PHAVU; Uncharacterized protein
STRINGXP_007154400.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-46WRKY DNA-binding protein 48