PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G119800.1
Common NamePHAVU_003G119800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family CAMTA
Protein Properties Length: 998aa    MW: 112123 Da    PI: 7.7129
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G119800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.92.3e-54201353117
                CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         +e  +rwl++ ei++iL n++k++lt +++ rp+ gsl+L+nrk +ryfrkDG+ w+kkkdgktvrE+hekLK g+v+vl+cyYah+e+n+
  Phvul.003G119800.1  20 QEaAHRWLRPVEICEILRNYKKFKLTPDPPIRPPAGSLFLFNRKALRYFRKDGHRWRKKKDGKTVREAHEKLKAGSVDVLHCYYAHGEDNE 110
                         5559*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylev 117
                         +fqrr++w+L+e+l+++vlvhy++ 
  Phvul.003G119800.1 111 NFQRRSFWMLDEHLQHVVLVHYRQI 135
                         **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.79715141IPR005559CG-1 DNA-binding domain
SMARTSM010769.3E-7218136IPR005559CG-1 DNA-binding domain
PfamPF038595.7E-4822134IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.2E-7452540IPR013783Immunoglobulin-like fold
CDDcd001020.00197453539No hitNo description
PfamPF018331.3E-5454532IPR002909IPT domain
SuperFamilySSF812961.5E-16454539IPR014756Immunoglobulin E-set
CDDcd002046.01E-14642745No hitNo description
SuperFamilySSF484031.66E-15644748IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.2E-16648758IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.945653747IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.244686718IPR002110Ankyrin repeat
SMARTSM002480.1686715IPR002110Ankyrin repeat
SMARTSM002481600725755IPR002110Ankyrin repeat
SuperFamilySSF525402.26E-8853909IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.015857879IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876858887IPR000048IQ motif, EF-hand binding site
PfamPF006120.0013861878IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0015880902IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.377882909IPR000048IQ motif, EF-hand binding site
PfamPF006129.6E-5885902IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 998 aa     Download sequence    Send to blast
MAETTKYIPN SQLELEEILQ EAAHRWLRPV EICEILRNYK KFKLTPDPPI RPPAGSLFLF  60
NRKALRYFRK DGHRWRKKKD GKTVREAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSFWML  120
DEHLQHVVLV HYRQIKEGCN SGISHFPIVP ETLVGSSQNS SVLSSTKINT PISVVQTPFT  180
SSANKVDQNG HSSENEDVNS KDGPQASSHA QPISNSIIHS APSFTHEVAG FSELLRNPLI  240
STWSSTFPSY SPGTVLSPWT LIQNSSRNTI YMHDERHHIE GSVEGSEADF IVHKLNNAKL  300
DAANRMQDGV IFRDRLITDM YVQPVEENLL TVEQVENEDG LDTFRAHLYD HNDHPIVATT  360
KVQVEQKIKG GGLDNDESKW VESREMKKLD SFGRWMDKEI GGDCENSLMA SDSGNYWSTV  420
GADNEDKEVS SLRDIQLDMD SLGPSLSQEQ LFSIHDFSPD WAYTGVRTKV LIVGTFLGSK  480
KLSSETKWGC MFGEIEVSAE ALTDNVIRCQ TPLHSPGRVP FYVTCSNRLA CSEVREFQFD  540
EHPTKFLGPL GIKISPEVEV RLQMRLLKLV DLGPDNKCLK CSVSGCEKCK FKGIMYSTSD  600
GSGVFKETFQ IDGIDHINPR DILFQRLMRD KLYEWLIYKV HEGGKASHVL DDEGQGVIHL  660
AAALGYVWAM APLVAAGISP NFRDNRGRTG LHWASYFGRE ETVIALVKLG AAPGAVEDPT  720
SAFPPGQTAA DLASSRGHKG IAGYLAEADL TNQLSVLTVK KNETGNIATT MAADSAFQSA  780
DDDSSNLTMD EQHYLKESLA VFRKSAHAAA SILAAFRARS FCQRQLAKSR SDISDSVLDI  840
VADSLSKVQK MGHFEDYLHF AALKIQKRYR GWKGRKDFLK VANRIVKIQA HIRGHQVRKQ  900
YRKIVWSVSI VEKAILRWRR KGAGLRGFRG EQPGGIDEYD FLSDGRRQKS EDVKKALDRV  960
KSMVRNPEAR DQYMRLILKY QKFKIDDSGS SQSQHVV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G119800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154445.10.0hypothetical protein PHAVU_003G119800g
TrEMBLV7C8H00.0V7C8H0_PHAVU; Uncharacterized protein
STRINGXP_007154445.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF128892526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-151Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains