PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G133100.1
Common NamePHAVU_003G133100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YA
Protein Properties Length: 236aa    MW: 25803.1 Da    PI: 10.1107
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G133100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.73.9e-3375131158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  Phvul.003G133100.1  75 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALKRVRGSGGRF 131
                         57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005219.3E-3773134IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.97174134IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-257799IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.9E-2877131IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607999IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-25108131IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MKPFLLSNRP DTMYNCSQVD FSHSMAHTPY PCADPYFASS LVAYAPQAIN QPQMIPQMLG  60
LASTRIALPV ELAEDGPIYV NAKQYHGILR RRQSRAKLEA QNKLIKSRKP YLHESRHRHA  120
LKRVRGSGGR FLSAKQLQES NSEHVENTHS GPGPVKVYQK KDASEVESHP SRTVENACIT  180
FTAISGLTSM SSNSLNFRQP EHNFLGNSSN KGGSSQCSGG LSFGGGTRQC ASVGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2375147271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115124RHRHALKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G133100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965761e-141BT096576.1 Soybean clone JCVI-FLGm-15L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154608.11e-176hypothetical protein PHAVU_003G133100g
TrEMBLV7C8T71e-175V7C8T7_PHAVU; Uncharacterized protein
STRINGXP_007154608.11e-176(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-44nuclear factor Y, subunit A3