PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G135400.1
Common NamePHAVU_003G135400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 405aa    MW: 46308.2 Da    PI: 6.3337
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G135400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1118.1e-35731642102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk++e++ed++++ ++sws++ +sfvv+d++ef+k++LpkyFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F+ gkk 
  Phvul.003G135400.1  73 FLKKTFEMVEDSHTDPVVSWSQTRDSFVVWDSHEFSKTLLPKYFKHNNFSSFVRQLNTYGFRKVDSDR---------WEFANEGFQGGKKY 154
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+++
  Phvul.003G135400.1 155 LLKNIRRRSK 164
                         ********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.03E-3469162IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.1E-5769162IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.2E-3769162IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.6E-197396IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.8E-3173162IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-19111123IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340112136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-19124136IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGEEVARVKA EMFDDGERDR HDDVFSESKA SGVTEEPTAV HVKEEADDGS VNGFMDKTPK  60
PMEGLHEMGP PPFLKKTFEM VEDSHTDPVV SWSQTRDSFV VWDSHEFSKT LLPKYFKHNN  120
FSSFVRQLNT YGFRKVDSDR WEFANEGFQG GKKYLLKNIR RRSKYNRLHQ GAFTMVKPGV  180
EAEMEKLKKD QNILKVEILK LRQQQENSHV QLTNVQERVR CAEMKQYQMM FFLTRMARRP  240
AFVEQLIQKI RRKREVDGND MVKRPRLIGN PCSVPFPKTM GTTPNVDYRH QSHKQFPSMQ  300
SELDGFLSET VNISKLEHPT PSPLEDELCN SVQGLSSHGC SSANAPDASS AYHVMSEKLM  360
RENSLVDGEL DVNDSNIYLE LEDLITKPTD WSLGSAFGLV EQTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-22491626129Heat shock factor protein 1
5d5v_B2e-22491626129Heat shock factor protein 1
5d5v_D2e-22491626129Heat shock factor protein 1
5d8k_B8e-23711623105Heat shock factor protein 2
5d8l_B8e-23711623105Heat shock factor protein 2
5d8l_D8e-23711623105Heat shock factor protein 2
5d8l_F8e-23711623105Heat shock factor protein 2
5d8l_H8e-23711623105Heat shock factor protein 2
5hdk_A9e-23711628110Heat shock factor protein 2
5hdk_B9e-23711628110Heat shock factor protein 2
5hdk_C9e-23711628110Heat shock factor protein 2
5hdk_D9e-23711628110Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G135400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154638.10.0hypothetical protein PHAVU_003G135400g
TrEMBLV7C8X90.0V7C8X9_PHAVU; Uncharacterized protein
STRINGXP_007154638.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-79heat shock transcription factor A2