PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G135700.1
Common NamePHAVU_003G135700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 471aa    MW: 53529.8 Da    PI: 6.3941
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G135700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.51.6e-10327372454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h + Er+RR+++ ++f+eL  ll +      +K sKa+iL+ A e I sL
  Phvul.003G135700.1 327 YHTISERKRREKLSECFQELSALLYPE-----TKKSKATILKAAQETIISL 372
                         699*********************998.....8*************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.8E-11322385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-13322386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.963323372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-8327372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-9328372No hitNo description
SMARTSM003531.0E-8329378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDDVYALPQA PRTDFLRTLL QSFGCTYVCI RLFFFDGLYN LPNNQPSSSL GSEAERLFQQ  60
YRALTFDVSQ ECVPGVAFRN QLPYVQLKLL DLLPLASTQL QKQFFLEARI EMAVFMGCKM  120
GEIELGFSNI SQADIETSLK NLFPEDFYLR SQSIDQNPYS SSSSSFISIS TDTSNQHSSL  180
SLDIPGISHS NFPEALGVAP TQPTPHQQTI QPLSQLIPFP NYLRTPEGEH EQIIRTLIQV  240
MSSTSQHHQP QPILPHNSAI HPAASDFSRH RPDMINSNIK PHMESNSSRQ NLQNTSFPLF  300
KNFNSMRMRE CNSIEATHPI SSQKKYYHTI SERKRREKLS ECFQELSALL YPETKKSKAT  360
ILKAAQETII SLMADIEKLN NKRKQQLMTD LSRVESSSSE EQMVELRVTV REQSCHIDVL  420
ISILEFLERV QNVTLISTNT NLHITEGGTT IDELTFRLRI IEVCIPNTFQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336ERKRRE
2332337RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G135700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154643.10.0hypothetical protein PHAVU_003G135700g
TrEMBLV7C8Z50.0V7C8Z5_PHAVU; Uncharacterized protein
STRINGXP_007154643.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-16bHLH family protein