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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Phvul.003G138200.1 | ||||||||
| Common Name | PHAVU_003G138200g | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 202aa MW: 22988.4 Da PI: 9.6255 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 56 | 7e-18 | 73 | 127 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q Le+ F+ + +++ +++ LA++l+L++rqV vWFqNrRa+ k
Phvul.003G138200.1 73 RKKLRLSKDQSSMLENSFKLHTTLNPVQKQALAHQLKLKTRQVEVWFQNRRARTK 127
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 105.3 | 4.8e-34 | 73 | 161 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rlsk+q+++LE+sF+ +++L+p +K++la++L+l++rqv+vWFqnrRARtk+kq+E++ e Lk+++++l++en+rL+ke +e+r +
Phvul.003G138200.1 73 RKKLRLSKDQSSMLENSFKLHTTLNPVQKQALAHQLKLKTRQVEVWFQNRRARTKLKQTEVEREWLKKQCQNLSDENKRLKKELQEVR-A 161
69***********************************************************************************998.4 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 2.3E-17 | 54 | 130 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 5.99E-18 | 58 | 130 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 16.73 | 69 | 129 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 4.3E-14 | 71 | 133 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 2.9E-15 | 73 | 127 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 1.95E-11 | 74 | 130 | No hit | No description |
| PROSITE pattern | PS00027 | 0 | 104 | 127 | IPR017970 | Homeobox, conserved site |
| SMART | SM00340 | 1.1E-12 | 129 | 172 | IPR003106 | Leucine zipper, homeobox-associated |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 202 aa Download sequence Send to blast |
MEDAEECITG LCLGLGMGGH VPIKGKQKEK RPVACLDLAF ELCPKGEAIN LNHDKVESTD 60 SDNDNSNNNN RSRKKLRLSK DQSSMLENSF KLHTTLNPVQ KQALAHQLKL KTRQVEVWFQ 120 NRRARTKLKQ TEVEREWLKK QCQNLSDENK RLKKELQEVR ALKVGCIQLS KTATLTMCSS 180 CEKLVKLNEE KKNNIESEGR N* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 70 | 76 | RSRKKLR |
| 2 | 71 | 77 | SRKKLRL |
| 3 | 121 | 129 | RRARTKLKQ |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Phvul.003G138200.1 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | KT031169 | 1e-125 | KT031169.1 Glycine max clone HN_CCL_118 homeodomain/HOMEOBOX transcription factor (Glyma13g00310.1) mRNA, partial cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_007154673.1 | 1e-144 | hypothetical protein PHAVU_003G138200g | ||||
| Swissprot | Q05466 | 2e-45 | HAT4_ARATH; Homeobox-leucine zipper protein HAT4 | ||||
| TrEMBL | V7C925 | 1e-143 | V7C925_PHAVU; Uncharacterized protein | ||||
| STRING | XP_007154673.1 | 1e-144 | (Phaseolus vulgaris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF5664 | 28 | 51 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37790.1 | 2e-38 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Phvul.003G138200.1 |
| Entrez Gene | 18634846 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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