PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G139900.1
Common NamePHAVU_003G139900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19915.3 Da    PI: 10.0525
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G139900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.68e-242169149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        ++ie +sn+qvtfskRr g++KKA+EL++LC+++va+i+fs+  kl+ +
  Phvul.003G139900.1 21 EKIEKSSNKQVTFSKRRVGLFKKASELCILCNVNVAIIVFSPAEKLFCF 69
                        579******************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.3E-311372IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.2781373IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-261484IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-191535IPR002100Transcription factor, MADS-box
PfamPF003192.0E-232269IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-193550IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-195071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDRFKQVEKK KNTGRKKIVI EKIEKSSNKQ VTFSKRRVGL FKKASELCIL CNVNVAIIVF  60
SPAEKLFCFG HPDVEAIVGN YLKGAKVLVP SASRGSYEES NMQYEEAMRN LALEKKNLTE  120
TEALVKGMTR RWWEDPIDQM SERELEQFMV SLYELRKKLT ERAGKLFMLS IQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-161494279MEF2 CHIMERA
6byy_B7e-161494279MEF2 CHIMERA
6byy_C7e-161494279MEF2 CHIMERA
6byy_D7e-161494279MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G139900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154693.11e-124hypothetical protein PHAVU_003G139900g
TrEMBLV7C9391e-123V7C939_PHAVU; Uncharacterized protein
STRINGXP_007154693.11e-124(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-32AGAMOUS-like 62