PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G140800.1
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 241aa    MW: 27254 Da    PI: 5.0797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G140800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-135395754
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A+eYI++L
  Phvul.003G140800.1 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIEYIQNL 95
                        57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0254695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-1746109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-1349100No hitNo description
Gene3DG3DSA:4.10.280.101.6E-1652110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-115395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDNIVEDYDH FLDSFFQNEE LDSWAMDEAA LSGYYDSSSP DGGASSVASK NIVSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAIE YIQNLHEQEK RIKAEILNLE SGKLKNPTYE  120
FDHDLPVLLR SKKNRTEQLF DSGTSRNSPI ELIELRVTYM REKTFVVSLT CSKRTDTMVK  180
LCEVFESLKL KVITANITSF SGTLLKTVFI EADEEEKDIL QIKIQTAISA LNGAQSPMSI  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1351115966Transcription factor MYC2
5gnj_B1e-1351115966Transcription factor MYC2
5gnj_E1e-1351115966Transcription factor MYC2
5gnj_F1e-1351115966Transcription factor MYC2
5gnj_G1e-1351115966Transcription factor MYC2
5gnj_I1e-1351115966Transcription factor MYC2
5gnj_M1e-1351115966Transcription factor MYC2
5gnj_N1e-1351115966Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G140800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932130.0BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027921103.11e-159transcription factor bHLH35-like
SwissprotQ2HIV93e-91BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A1S3UNY91e-158A0A1S3UNY9_VIGRR; transcription factor bHLH35
STRINGXP_007154705.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-81bHLH family protein