PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G147100.1
Common NamePHAVU_003G147100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 163aa    MW: 18207.2 Da    PI: 8.2552
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G147100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000114769123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Phvul.003G147100.1 47 FSCNYCQRKFYSSQALGGHQNAH 69
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.82E-64474No hitNo description
PROSITE profilePS5015711.0944774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MNFHPNTSLH LRQPDEINHL NLDLLLEPSS SSSSSPSPIS PIEPRIFSCN YCQRKFYSSQ  60
ALGGHQNAHK LERTLAKKSR EMSSTMQSYG TQEQRSNFSP SHHLGRALGV NVVDDQGQSY  120
VRLGGRKEYS FGPKEGMASW SRGYTSEHVQ EDIGQLDLSL RL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G147100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154778.11e-118hypothetical protein PHAVU_003G147100g
SwissprotQ392614e-28ZFP2_ARATH; Zinc finger protein 2
TrEMBLV7C9B91e-116V7C9B9_PHAVU; Uncharacterized protein
STRINGXP_007154778.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-26zinc finger protein 2