PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G153100.1
Common NamePHAVU_003G153100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family AP2
Protein Properties Length: 369aa    MW: 42544.2 Da    PI: 7.1866
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G153100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.51.9e-1450109155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  ++n    k+ ++++lg ++ +  Aa a++ a++k++g
  Phvul.003G153100.1  50 SIYRGVTRHRWTGRYEAHLWDkHCWNEtqnKTgRQVYLGAYDNEVAAAHAYDLAALKYWG 109
                         57***********************77755559**********99*************98 PP
2AP251.62.3e-16152203155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Phvul.003G153100.1 152 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDLAAIEYRG 203
                         89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-1150109IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1650119IPR016177DNA-binding domain
SMARTSM003801.7E-2351123IPR001471AP2/ERF domain
PROSITE profilePS5103219.16451117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1551118IPR001471AP2/ERF domain
PRINTSPR003675.5E-65263IPR001471AP2/ERF domain
CDDcd000181.24E-24152213No hitNo description
PfamPF008471.4E-12152203IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18152213IPR016177DNA-binding domain
PROSITE profilePS5103218.386153211IPR001471AP2/ERF domain
SMARTSM003804.8E-25153217IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-17153212IPR001471AP2/ERF domain
PRINTSPR003675.5E-6193213IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAKKSHSQLR IQKNNATNIA NNLNEINTVP TKVKRTRRSV PRDSPPQRSS IYRGVTRHRW  60
TGRYEAHLWD KHCWNETQNK TGRQVYLGAY DNEVAAAHAY DLAALKYWGQ DTILNFPLSN  120
YLNELKEMGG QSREEYIGSL RRKSSGFSRG ISKYRGVARH HHNGRWEARI GKVFGNKYLY  180
LGTYATQEEA ATAYDLAAIE YRGLNAVTNF DLSRYIKWLK PNNNTNSNDQ ISINLSHMNN  240
NCSSSNFTPN PDQEQEQELR FFHNQDSLNT IVEEATLVPH QPRPSGATSA LELLLQSSKF  300
KEMMEMTSVA NMSAQMESEL PQCAFPDHIQ TYFEYEDSNR YEEVDDLMFK FNEFSSIVPF  360
YHCDEFES*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G153100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007154853.10.0hypothetical protein PHAVU_003G153100g
SwissprotQ94AN41e-104AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV7C9J20.0V7C9J2_PHAVU; Uncharacterized protein
STRINGXP_007154853.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-98ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]