PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G177300.1
Common NamePHAVU_003G177300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TCP
Protein Properties Length: 376aa    MW: 42336.1 Da    PI: 6.8903
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G177300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.68.8e-421202623133
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasns 85 
                          k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGfdk+skt+eWLl qak +ik+l++         ++ss sece +ss  +++ s
  Phvul.003G177300.1 120 SKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLGFDKASKTVEWLLDQAKVEIKQLAREknsaggakGASSTSECEGVSSLDEVAVS 210
                         69*************************************************************8888877766666888444433333322 PP

                 TCP  86 ssg....kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                         + +    ++ ++ + + ++  ++++++  +kesr++ar+rarertrekmr +
  Phvul.003G177300.1 211 GVNeeqeRETPNMKRRTSKVCRKTAFNTTDKESRERARERARERTREKMRSR 262
                         2223222444444444444555555788888******************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-43120261IPR005333Transcription factor, TCP
PROSITE profilePS5136933.056121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.68241258IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MYSSNTSLNG NDLLSYPNQP FCFRPFSFES NPTNSSKDQS NSNYALPPLP PPFSFLQSFD  60
ENIFLEHHHD LLLLHQSLAD PGISRNLDVA AEIAPIPCFG QGGNSFLDVP MEHTARKRSS  120
KRDRHSKINT ARGLRDRRMR LSLEVAKRFF GLQDMLGFDK ASKTVEWLLD QAKVEIKQLA  180
REKNSAGGAK GASSTSECEG VSSLDEVAVS GVNEEQERET PNMKRRTSKV CRKTAFNTTD  240
KESRERARER ARERTREKMR SRRLLAADAS NLNPLSSWNP FETVQDSPGT QSQSVNHPSL  300
DVHLPEPEEP TSHAKEHLGT VEDIAPHEVN SFVIMNKWSP TMVFNSLNNS AILHEHQFAE  360
FQSFGKPWEA YNDHI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245257RARERARERTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G177300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155147.10.0hypothetical protein PHAVU_003G177300g
TrEMBLV7CE430.0V7CE43_PHAVU; Uncharacterized protein
STRINGXP_007155147.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.22e-21TCP family protein