PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G182700.1
Common NamePHAVU_003G182700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21509.5 Da    PI: 10.0635
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G182700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.1e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqv+fskRr g+lKKA E+SvLCda+va+++fs++gkl ++s+
  Phvul.003G182700.1  9 KRIENKINRQVSFSKRRSGLLKKAREISVLCDADVALLVFSPKGKLLDFSN 59
                        79*********************************************9985 PP
2K-box836.6e-2882163889
               K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                         + ++a +e++  e ++Lk+++e Lq+ qR+++Ge+L+sL+l+ Lq+LeqqL+++lk+iRs+Kn+ ++e+i++lqkk ke ++
  Phvul.003G182700.1  82 AGDQAPNENWVMEQERLKDRVEALQQRQRNFMGEELHSLNLRGLQRLEQQLDSALKHIRSRKNQTMHESISKLQKKIKEKEK 163
                         45667789********************************************************************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.389161IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-37160IPR002100Transcription factor, MADS-box
CDDcd002651.45E-36279No hitNo description
SuperFamilySSF554559.55E-31291IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014862.8E-2186163IPR002487Transcription factor, K-box
PROSITE profilePS5129713.68388184IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVS FSKRRSGLLK KAREISVLCD ADVALLVFSP KGKLLDFSNQ  60
PSVERILQRY ERHSYAERQD GAGDQAPNEN WVMEQERLKD RVEALQQRQR NFMGEELHSL  120
NLRGLQRLEQ QLDSALKHIR SRKNQTMHES ISKLQKKIKE KEKALGPEEH EVAKYQGCDF  180
CHCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16174173MEF2 CHIMERA
6byy_B1e-16174173MEF2 CHIMERA
6byy_C1e-16174173MEF2 CHIMERA
6byy_D1e-16174173MEF2 CHIMERA
6bz1_A1e-16174173MEF2 CHIMERA
6bz1_B1e-16174173MEF2 CHIMERA
6bz1_C1e-16174173MEF2 CHIMERA
6bz1_D1e-16174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G182700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311771e-147KT031177.1 Glycine max clone HN_CCL_28 MADS transcription factor (Glyma05g07380.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155208.11e-133hypothetical protein PHAVU_003G182700g
SwissprotQ6E6S75e-72AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLV7CAK11e-132V7CAK1_PHAVU; Uncharacterized protein
STRINGXP_007155208.11e-133(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-65AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]