PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G189000.1

Common Name

PHAVU_003G189000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

NAC

Protein Properties

Length: 357aa MW: 40333.5 Da PI: 7.942

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G189000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179	1.3e-55	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL kkv ++++ + ++i evd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke Phvul.003G189000.1 16 LPPGFRFHPTDEELITHYLYKKVIDTNFCA-RAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKE 105 79***********************988.89***********888999********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++ +++lvg+kktLvfy+grapkgek++Wvmheyrle Phvul.003G189000.1 106 IFR-GKSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 142 .999****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.75E-64	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	59.567	16	166	IPR003441	NAC domain
Pfam	PF02365	2.7E-29	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MEKLSLLSKE DHHMDLPPGF RFHPTDEELI THYLYKKVID TNFCARAIGE VDLNKSEPWD 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV 120 FYRGRAPKGE KSNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSAG KKTHISGIMR 180 LDSFANELGS SALPPLSDSS PSIGNTKPLN ESAYVPCFSN PIDVQRNQEG VFDSLNNSIY 240 GVSSNPLDFL PRMPPSASFY STQAVQAVPN LTFPGSVYTL QDHTILRAMC ENNGNDYKSE 300 RDMISVSQET GLTTDINPET SSNFDMGRRH FDNHNHPSVS VSVSVAPLDL DGLWNY*

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MEKLSLLSKE DHHMDLPPGF RFHPTDEELI THYLYKKVID TNFCARAIGE VDLNKSEPWD  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIFRGK SLVGMKKTLV  120
FYRGRAPKGE KSNWVMHEYR LEGKFSVHNL PKTAKNEWVI CRVFQKSSAG KKTHISGIMR  180
LDSFANELGS SALPPLSDSS PSIGNTKPLN ESAYVPCFSN PIDVQRNQEG VFDSLNNSIY  240
GVSSNPLDFL PRMPPSASFY STQAVQAVPN LTFPGSVYTL QDHTILRAMC ENNGNDYKSE  300
RDMISVSQET GLTTDINPET SSNFDMGRRH FDNHNHPSVS VSVSVAPLDL DGLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	13	172	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_B	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_C	2e-54	13	172	17	174	NAC domain-containing protein 19
3swm_D	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_A	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_B	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_C	2e-54	13	172	17	174	NAC domain-containing protein 19
3swp_D	2e-54	13	172	17	174	NAC domain-containing protein 19
4dul_A	2e-54	13	172	14	171	NAC domain-containing protein 19
4dul_B	2e-54	13	172	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G189000.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU661925	0.0	EU661925.1 Glycine max NAC domain protein (NAC28) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155297.1	0.0	hypothetical protein PHAVU_003G189000g
Swissprot	Q9FLJ2	1e-154	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	V7CEG8	0.0	V7CEG8_PHAVU; Uncharacterized protein
STRING	XP_007155297.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-146	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Phvul.003G189000.1
Entrez Gene	18635367

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]