PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G189300.1

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 473aa MW: 51448.9 Da PI: 5.0025

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G189300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125	2.4e-39	118	178	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k l+cprC+s++tkfCyynny+++qPryfCkaC+ryWt+GG++rnvPvG+grrknk+s+ Phvul.003G189300.1 118 PDKVLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNST 178 78999*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-29	111	175	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.2E-32	119	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.537	122	176	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	124	160	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MHENRDPAIR LFGQKIPFPE DVDIEEEEED DDDDEGCDGR DQEIEEDKDA GVDNVTEEEL 60 EADSAPSAGE TKDSGTPEAI VNPETPSIEE ETAKSKADKS EKEQGDAANS QEKTLKKPDK 120 VLPCPRCKSM DTKFCYYNNY NVNQPRYFCK ACQRYWTAGG TMRNVPVGAG RRKNKNSTSH 180 YRHISISEAL QAARIDSHNG THLPTLKGNG RVLSFGLDAN APICDSMASV LNLGEKKVPN 240 GTKNGFPHGF EDQGLPIPRK SGENGDDSST TSSITVSNSM GESSKNTFQQ QPVLQPHGFI 300 PQLPCVPWPF TWNSPVPPPA LCPSGFPLPF YPPATFWNCG MPGNWNVPWF SSLSSASNPN 360 SPSSAPNSPT LGKHSRDGDM IKQDSLHKEE ASKPRNGGVL VPKTLRIDDP NEAAKSSIWA 420 TLGIKNESLS GGGMFKAAFQ SKKDEKSRVE ASPVLMANPA ALSRSLNFHE NS*

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MHENRDPAIR LFGQKIPFPE DVDIEEEEED DDDDEGCDGR DQEIEEDKDA GVDNVTEEEL  60
EADSAPSAGE TKDSGTPEAI VNPETPSIEE ETAKSKADKS EKEQGDAANS QEKTLKKPDK  120
VLPCPRCKSM DTKFCYYNNY NVNQPRYFCK ACQRYWTAGG TMRNVPVGAG RRKNKNSTSH  180
YRHISISEAL QAARIDSHNG THLPTLKGNG RVLSFGLDAN APICDSMASV LNLGEKKVPN  240
GTKNGFPHGF EDQGLPIPRK SGENGDDSST TSSITVSNSM GESSKNTFQQ QPVLQPHGFI  300
PQLPCVPWPF TWNSPVPPPA LCPSGFPLPF YPPATFWNCG MPGNWNVPWF SSLSSASNPN  360
SPSSAPNSPT LGKHSRDGDM IKQDSLHKEE ASKPRNGGVL VPKTLRIDDP NEAAKSSIWA  420
TLGIKNESLS GGGMFKAAFQ SKKDEKSRVE ASPVLMANPA ALSRSLNFHE NS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G189300.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155301.1	0.0	hypothetical protein PHAVU_003G1893001g, partial
Swissprot	Q8LFV3	1e-123	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	V7CDD4	0.0	V7CDD4_PHAVU; Uncharacterized protein (Fragment)
STRING	XP_007155301.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-112	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Phvul.003G189300.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]