PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G189900.1

Common Name

PHAVU_003G189900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Nin-like

Protein Properties

Length: 272aa MW: 31728.9 Da PI: 5.2966

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G189900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.5	2.1e-26	136	184	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s +++s+yF++pi++AA+eL+v+lT+LK++CR++GI+RWPhRk+ sl Phvul.003G189900.1 136 MLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSL 184 68999*****************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.565	119	204	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-21	137	184	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MESHPLMGWS SYYQIDEKSF PFTCQFSYSE ISGVYPPLHD LAIQEYHHDA VPLMEYYPSD 60 PLYETLAIEP TPSLRADYDF YDINKGLSVW NEVDAVFDTE VGFLFRKNEE RGGGLEEMME 120 NKQGREERTN SSSSRMLSRK TISQYFYMPI TQAARELNVG LTLLKKRCRE LGIRRWPHRK 180 LMSLQTLINN VQELLKEEGP ESEEKLKYAI ETLESEKKLL EEMPDIELED NTKRLRQACF 240 KANYKKRKLG QREPQCSSWS ACASHFSTYI P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G189900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	7e-96	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155308.1	0.0	hypothetical protein PHAVU_003G189900g
TrEMBL	V7CAU0	0.0	V7CAU0_PHAVU; Uncharacterized protein
STRING	XP_007155308.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-43	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Phvul.003G189900.1
Entrez Gene	18635377