PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G199500.1

Common Name

PHAVU_003G199500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bHLH

Protein Properties

Length: 197aa MW: 22510.2 Da PI: 10.0843

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G199500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2e-09	17	67	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR +++ ++L +++P+ + k+++ ls + L +A YIk+L+ Phvul.003G199500.1 17 KTIERNRRIHMKGLCFKLVSIIPSkDLKPTKDMLSQQDQLDLAATYIKHLR 67 689*******************987777777**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.62E-9	4	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.026	11	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.49E-4	11	71	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-9	15	85	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-6	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MKNTNTTITA SSKLDRKTIE RNRRIHMKGL CFKLVSIIPS KDLKPTKDML SQQDQLDLAA 60 TYIKHLRERL EKLKGEKEKA MNMMRTTQTN NGIFNIESQL PLLEIKELGS GIEVMLISGV 120 NKNFMLYEVI SVLEEEGVEV VTANFTTVAN KIFYTVHAKV KISRVGVEST RIYQRLQELI 180 QPLEAGSTYR DRKQNY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G199500.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095983	1e-177	BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155415.1	1e-143	hypothetical protein PHAVU_003G199500g
TrEMBL	V7CB84	1e-141	V7CB84_PHAVU; Uncharacterized protein
STRING	XP_007155415.1	1e-142	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6849	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-23	bHLH family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G199500.1
Entrez Gene	18635474