PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G200600.1

Common Name

PHAVU_003G200600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 329aa MW: 35853.2 Da PI: 7.2672

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G200600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	127	5.6e-40	52	111	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprC+st+tkfCyynnysl+qPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+ Phvul.003G200600.1 52 QDQALKCPRCESTHTKFCYYNNYSLTQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV 111 6899******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	50	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	53	110	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.994	56	110	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	58	94	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MGFSSLHVCM NSSEQWLQGT IHEESRVDSS SPSGDMLPCS RPMTERRLRP SQDQALKCPR 60 CESTHTKFCY YNNYSLTQPR YFCKTCRRYW TKGGTLRNIP VGGGCRKNKK VSIKKHNDHQ 120 PAINQNQTQP AGPSYIHNHK DLQHSFLDVQ FSHLNNLLGT NAGVLGNPNF MDSKYSMGML 180 ENPGPIDFME SGLDGMNMIG GSTRNLDLVE NSDMSVGGGV GLGDMSGAYN GLPLNYQGLS 240 TAAFGGMSLD GSISNVGTYI MDSCQRLMLP YEGGHNILNG SIDVKPNPKL LSLEWHDQGC 300 SDAEKVSLGY LNGGSWSGYG SSTTNPLV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G200600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155431.1	0.0	hypothetical protein PHAVU_003G200600g
TrEMBL	V7CDR0	0.0	V7CDR0_PHAVU; Uncharacterized protein
STRING	XP_007155431.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5092	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	7e-54	Dof family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G200600.1
Entrez Gene	18635486