PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G213500.1
Common NamePHAVU_003G213500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 290aa    MW: 32833.1 Da    PI: 6.6778
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G213500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.59.5e-082342672154
                         HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         k +yp+++++++L +++gL+ +q+ +WF N+R +
  Phvul.003G213500.1 234 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 267
                         469*****************************87 PP
2ELK25.53e-09188209122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK +L++++++++ ++++E++
  Phvul.003G213500.1 188 ELKIELKQGFKSRIEDVREEIL 209
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.8E-172569IPR005540KNOX1
PfamPF037901.1E-162767IPR005540KNOX1
SMARTSM012561.5E-2277132IPR005541KNOX2
PfamPF037911.1E-1681131IPR005541KNOX2
PROSITE profilePS512139.132188208IPR005539ELK domain
PROSITE profilePS5007111.645208271IPR001356Homeobox domain
SuperFamilySSF466893.21E-16210275IPR009057Homeodomain-like
SMARTSM003893.4E-11210275IPR001356Homeobox domain
CDDcd000864.12E-12211272No hitNo description
Gene3DG3DSA:1.10.10.601.5E-25215273IPR009057Homeodomain-like
PfamPF059201.0E-17228267IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MQEAGLGMNM LSAEVSAAAA DHHHRQVKAE IATHPLCEQL LAAHVSCLRV ATPIDQLPLI  60
DAQLSHFNNL LRSYASHYSH SHDRQELDNF MTQYLIVLCA LKEQLQQHVR VHAVEAVMAC  120
RDIESTLQAL TGVSLGEGSG ATMSDDEEDF QMDGSLDQSS ADGHDMMGFG PLLPTESERS  180
LMERVRQELK IELKQGFKSR IEDVREEILR KRRAGKLPGD TTSVLKAWWQ QHAKWPYPTE  240
DDKAKLVEET GLQLKQINNW FINQRKRNWH SNSQSVTSLK SKRKRDYSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-13211275872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1264284RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtPossible developmental regulator.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G213500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By wounding; up to 7-fold increase.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939000.0BT093900.1 Soybean clone JCVI-FLGm-17N4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155574.10.0hypothetical protein PHAVU_003G213500g
SwissprotP466061e-161HD1_BRANA; Homeobox protein HD1
TrEMBLV7CDX50.0V7CDX5_PHAVU; Uncharacterized protein
STRINGXP_007155574.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63483450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-163KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Boivin R,Hamel F,Beauseigle D,Bellemare G
    Stage-specific transcription of the homebox gene Bnhd1 in young tissues and flowers of Brassica napus.
    Biochim. Biophys. Acta, 1994. 1219(1): p. 201-4
    [PMID:7916213]