PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G223600.1

Common Name

PHAVU_003G223600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 206aa MW: 22308.9 Da PI: 4.5871

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G223600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.5	1.8e-14	47	94	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G r ++ +g+Wv+eIr+p++ +kr++lg++ ae+Aa+a++ a+++l+g Phvul.003G223600.1 47 YRGTR-CR-SGKWVSEIREPRK---TKRIWLGTYPAAEMAAAAYDVAALALKG 94 66665.55.6*******843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	19.572	46	102	IPR001471	AP2/ERF domain
CDD	cd00018	9.27E-12	46	104	No hit	No description
SMART	SM00380	6.7E-26	46	108	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.22E-17	47	104	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	2.3E-24	47	103	IPR001471	AP2/ERF domain
Pfam	PF00847	3.2E-8	53	94	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MDDNPFPNVP LPPPPIQVPD NFFLSSSSSP TPTTSSPSPT PSTAFRYRGT RCRSGKWVSE 60 IREPRKTKRI WLGTYPAAEM AAAAYDVAAL ALKGPDTPLN FPNSILSYPI PASLSATDIR 120 AAAAAAAQAR IVRAPQESGQ AVNPHIGQEL ERREEYYDED ELLNMPNLLD EMARGMQVSP 180 PRISSFSSDD SPGNSDGDNL WSYTL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G223600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	0.0	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155698.1	1e-147	hypothetical protein PHAVU_003G223600g
Swissprot	Q9FJ90	6e-47	ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBL	V7CBX9	1e-146	V7CBX9_PHAVU; Uncharacterized protein
STRING	XP_007155698.1	1e-147	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF562	32	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52020.1	2e-24	ERF family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G223600.1
Entrez Gene	18635716

Publications ? help Back to Top
Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]