PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G228600.1
Common NamePHAVU_003G228600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 560aa    MW: 62384.7 Da    PI: 6.7295
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G228600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.81.8e-26316370156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k +++WtpeLH++Fv+aveqL  +++A+P++ilelmkv+gLt+++v+SHLQkYR++
  Phvul.003G228600.1 316 KMKVDWTPELHKKFVKAVEQL-SIDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 370
                         5689*****************.9*******************************96 PP
2Response_reg26.24.1e-10201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedale 88 
                         vl+ + + + +  +r  le  +y +v ++ d  eal  +      +++ ++ ++ +    G+++l+   +++ +lp i+ + +   +++ +
  Phvul.003G228600.1  20 VLLLEGDSISAAEIRAKLEAMDY-NVSTFCDENEALSAISSTPesFHIAIVEVSSSSsEGGFKFLE---NAK-DLPTIMTSNNHCLNTMMK 105
                         567777778888899999*****.***************666666********9999445566654...444.899**9999999****** PP

                         HHHTTESEEEESS--HHHHHH CS
        Response_reg  89 alkaGakdflsKpfdpeelvk 109
                         ++ +Ga +flsKp ++++l +
  Phvul.003G228600.1 106 CIALGAVEFLSKPLSEDKLKN 126
                         *****************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.42E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.5E-1616139No hitNo description
SMARTSM004489.2E-418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.98519132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-720126IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.62E-621131No hitNo description
PROSITE profilePS5129412.553313372IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-26314373IPR009057Homeodomain-like
SuperFamilySSF466891.79E-17314373IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23316371IPR006447Myb domain, plants
PfamPF002491.7E-6319368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MVFTANDLQE WKDFPKGLKV LLLEGDSISA AEIRAKLEAM DYNVSTFCDE NEALSAISST  60
PESFHIAIVE VSSSSSEGGF KFLENAKDLP TIMTSNNHCL NTMMKCIALG AVEFLSKPLS  120
EDKLKNIWQH VVHKAFSSGT SILCESLKPV KESVVPMLQL QKDNEQHESS VSIDIEKVSR  180
FTDNDHVLSP GNDKYPAPST PQLMHGTRLL DDGDCQEQTN CSTEKESGEH DGESKSVETT  240
CGNLNAETES TAQERKSEIT LARKEVDLVD TSKGESVASL HTQKRKVVSN TDKNTKSPNK  300
VGVRSDSCEI RPSRKKMKVD WTPELHKKFV KAVEQLSIDQ AIPSRILELM KVEGLTRHNV  360
ASHLQKYRMH KRQIFPKEED RKWLNQRERS YCLQRPIMAF PPYHSNHTLP LAPVYPMWGQ  420
SSSQTAGMQI WSSPGYPLWQ PTAENWHWKP FPRMHADAWG CPVLPVPPPP QAPFPYSQNM  480
PALLNADAAD HTFTMPQSSL EHYPAQEVVD KVVKEAVSKP WLPLPLGLKP PSTDSVLAEL  540
SRQGISSIPP RSSKGSNSG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-16321370655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G228600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155750.10.0hypothetical protein PHAVU_003G228600g
SwissprotQ6LA431e-141APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLV7CC890.0V7CC89_PHAVU; Uncharacterized protein
STRINGXP_007155750.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-138ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]