PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G230100.1
Common NamePHAVU_003G230100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LSD
Protein Properties Length: 150aa    MW: 15523.1 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G230100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.56.2e-152852125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL+YP+GA+sV+Ca+C++V
  Phvul.003G230100.1 28 CSGCRNLLMYPAGATSVCCAVCNAV 52
                        ************************9 PP
2zf-LSD145.51.2e-146791125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL+Y rGA++V+C++C+tV
  Phvul.003G230100.1 67 CGGCHTLLMYIRGATNVQCSCCHTV 91
                        ************************9 PP
3zf-LSD141.81.8e-13105129125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+Cr lL+Y +GA+sV+Ca+C++V
  Phvul.003G230100.1 105 CGNCRMLLMYQYGARSVKCAVCNFV 129
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.5E-422126No hitNo description
TIGRFAMsTIGR010534.8E-142554IPR005735Zinc finger, LSD1-type
PfamPF069435.5E-122852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486959.49E-528126IPR011031Multihaem cytochrome
TIGRFAMsTIGR010537.9E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010534.2E-12102132IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MPVPLAPYPA PTAPYTPPAN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AVTGVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TNVQCSCCHT VNLALEANQV AHVNCGNCRM LLMYQYGARS  120
VKCAVCNFVT SVGATASTTE QKFNTVTIQ*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G230100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-176BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155770.11e-103hypothetical protein PHAVU_003G230100g
SwissprotQ93ZB17e-81LOL1_ARATH; Protein LOL1
TrEMBLV7CCA81e-102V7CCA8_PHAVU; Uncharacterized protein
STRINGXP_007155770.11e-103(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.17e-81lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]