PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G230100.2
Common NamePHAVU_003G230100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LSD
Protein Properties Length: 137aa    MW: 14457.8 Da    PI: 7.2993
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G230100.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.65.4e-152852125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL+YP+GA+sV+Ca+C++V
  Phvul.003G230100.2 28 CSGCRNLLMYPAGATSVCCAVCNAV 52
                        ************************9 PP
2zf-LSD145.71e-146791125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL+Y rGA++V+C++C+tV
  Phvul.003G230100.2 67 CGGCHTLLMYIRGATNVQCSCCHTV 91
                        ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010534.1E-142554IPR005735Zinc finger, LSD1-type
PfamPF069434.8E-122852IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.8E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-126791IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MPVPLAPYPA PTAPYTPPAN GAQSQLVCSG CRNLLMYPAG ATSVCCAVCN AVTGVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TNVQCSCCHT VNLALEGGTC QLWELQDATH VPIWSKIREM  120
CSLQFCNISW GHSKHH*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G230100.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0904151e-152BT090415.1 Soybean clone JCVI-FLGm-4M18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155769.13e-96hypothetical protein PHAVU_003G230100g
SwissprotQ93ZB12e-47LOL1_ARATH; Protein LOL1
TrEMBLV7CEH58e-95V7CEH5_PHAVU; Uncharacterized protein
STRINGXP_008799372.13e-73(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.13e-47lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]