PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G230700.1
Common NamePHAVU_003G230700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 262aa    MW: 28943.9 Da    PI: 7.4693
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G230700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001381103123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C + F++   L  H+++H
  Phvul.003G230700.1  81 YTCTFCRREFRSAQALGGHMNVH 103
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.08E-678108No hitNo description
PROSITE profilePS5015711.15781108IPR007087Zinc finger, C2H2
SMARTSM003550.006681103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGVSLFQYHG CRDCPCLRDQ IQNLYHPNPN STTTTTSSPP LPSSPSWMWN PRDQEDDSWE  60
VRAFAEDTSN IMGTTWPPRS YTCTFCRREF RSAQALGGHM NVHRRDRARL HQASPINHHQ  120
HHHPISSLSR SHHSPSFLNL CHSPDPLSNG GVCLLYPFPS PNTAPFSPLG HTTSFNNACA  180
DSPSSLFSPS SSLSHPPMRV PTCSNASFDF AVAQPATGRR NAFSSYSGKM EHEPATSSAH  240
HAQHEELDLE LRLGNRSTST S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-1276103229superman protein
2l1o_A1e-1276103229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G230700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155776.10.0hypothetical protein PHAVU_003G230700g
TrEMBLV7CES20.0V7CES2_PHAVU; Uncharacterized protein
STRINGXP_007155776.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35253155
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-32C2H2 family protein