PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G231000.1
Common NamePHAVU_003G231000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 381aa    MW: 42107.3 Da    PI: 5.0496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G231000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.2e-11202247454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+L
  Phvul.003G231000.1 202 DHIMAERKRREKLSQSFIALAALVPGL-----KKMDKASVLGDAIKYVKDL 247
                         699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434198247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9202247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-16202262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-12203252No hitNo description
SuperFamilySSF474595.1E-16203264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13204253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMEESNKPMD EASAPSWLSD LDMDDYNLFP DECAMNLNLF DDQEFLPQDI VNALEKQTQT  60
LQQSLSSECP SKTVSNSSTD DASFDFERPA KLLKTTSSSC CNSDSSTITN NLSPKLSPST  120
SFSSFQSQIL SFDNSNSSPP NNTTQFYGFD LNPTQNEMVS VSVPQPTKSR LPNQTPKWSS  180
KNQNFETKPS SHAKRSPAHA QDHIMAERKR REKLSQSFIA LAALVPGLKK MDKASVLGDA  240
IKYVKDLKER LAVLEEQSKK TRGESVVVLN KPDLSGDDDS SSCDESIDAD SVSDSLFELE  300
SRVSGKEMLL RIHCRKQKGL LVKLLAEIQR NNLFVINSSI LPFGDSIIDI TVVAQMGENY  360
NLTTKGLVKN LRVAAHKIMS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-12202264870Transcription factor MYC2
5gnj_B2e-12202264870Transcription factor MYC2
5gnj_E2e-12202264870Transcription factor MYC2
5gnj_F2e-12202264870Transcription factor MYC2
5gnj_G2e-12202264870Transcription factor MYC2
5gnj_I2e-12202264870Transcription factor MYC2
5gnj_M2e-12202264870Transcription factor MYC2
5gnj_N2e-12202264870Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211ERKRRE
2207212RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G231000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311060.0KT031106.1 Glycine max clone HN_CCL_80 bHLH transcription factor (Glyma05g23530.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155779.10.0hypothetical protein PHAVU_003G231000g
TrEMBLV7CEI40.0V7CEI4_PHAVU; Uncharacterized protein
STRINGXP_007155779.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-47bHLH family protein