PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G231100.1
Common NamePHAVU_003G231100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 347aa    MW: 38429.7 Da    PI: 6.1002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G231100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11158204354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         + h ++Er RR++i + f  L  l+P +     kK++K+++L +A++Y+k+L
  Phvul.003G231100.1 158 QDHIIAERMRREKISQQFIALSALIPDL-----KKMDKVSVLGEAIRYVKEL 204
                         5699************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.653155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-16158221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-9159204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.16E-10160209No hitNo description
SMARTSM003531.8E-12161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MTSMEESWTS WLCDMEPDDY SFISQSDIKV EDMIGSLASP CDIATALEEN PQSSFSQESH  60
SSVTESGIEE RPLKLLKKTC TSNSAKTDQL SQKKASTPSS YILSFDNTNP PTAKVESLVK  120
PETKVNRGIA LPSKNEPKRV TQESKKTGSS ARSSHHTQDH IIAERMRREK ISQQFIALSA  180
LIPDLKKMDK VSVLGEAIRY VKELKEKVKV MEEQGKRKSQ EPVMRGKKSQ VCATADEDVS  240
DTSSNSCELG NSDDPSSKTN LSLPEVEARV SKKNVLIRIL CEKEKVVLVN IFREIEKLHL  300
SVINSSALSF GSSVLDTTIV AEMEDEFKMS VKELAGNLRV GLMQFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G231100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155780.10.0hypothetical protein PHAVU_003G231100g
TrEMBLV7CCB70.0V7CCB7_PHAVU; Uncharacterized protein
STRINGXP_007155780.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-48bHLH family protein