PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G232000.1

Common Name

PHAVU_003G232000g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 300aa MW: 33099.4 Da PI: 8.4947

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G232000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.1e-18	153	207	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ ++++ LAk+l+L rqV vWFqNrRa+ k Phvul.003G232000.1 153 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTK 207 788899***********************************************98 PP
2	HD-ZIP_I/II	124.1	6.6e-40	153	242	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rl+keq++lLEesF+++++L+p++K++la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l Phvul.003G232000.1 153 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 242 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.72E-18	143	210	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.394	149	209	IPR001356	Homeobox domain
SMART	SM00389	2.0E-15	151	213	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-17	153	207	IPR009057	Homeodomain-like
Pfam	PF00046	5.0E-16	153	207	IPR001356	Homeobox domain
CDD	cd00086	8.94E-16	153	210	No hit	No description
PROSITE pattern	PS00027	0	184	207	IPR017970	Homeobox, conserved site
SMART	SM00340	2.8E-25	209	252	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	5.8E-10	209	243	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MMGLHQDPSD SGLQLILGLA LTATPEDTIT PSPPSISNNL HHHHLTTLRP NSYSSKSSFI 60 STSNSEPEPS LTLGLSRETY RQQVVKLPRN IGHNKVSSED PLEQTSPHSA ISSFSSGRVK 120 RERDLSCEEA DATETERVSS RASDEEEDGT TARKKLRLTK EQSALLEESF KQHSTLNPKQ 180 KQALAKQLSL RPRQVEVWFQ NRRARTKLKQ TEVDCEFLKK CCETLTDENR RLQKELQELK 240 ALKLAQPLYM PMSAATLTMC PACERLGGGV GGGASAKSPF SMAPKPHFFN PFANPSAAC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	201	209	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G232000.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155789.1	0.0	hypothetical protein PHAVU_003G232000g
Swissprot	P46604	6e-93	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	V7CEJ4	0.0	V7CEJ4_PHAVU; Uncharacterized protein
STRING	XP_007155789.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1144	33	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	3e-81	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G232000.1
Entrez Gene	18635801

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]