PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G234600.2
Common NamePHAVU_003G234600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 292aa    MW: 31715.6 Da    PI: 10.3972
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G234600.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.2e-11555146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                        +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Phvul.003G234600.2  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfsailRMRSNVDLKDKWRN 55
                        79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.774161IPR017930Myb domain
SuperFamilySSF466897.48E-15267IPR009057Homeodomain-like
SMARTSM007174.1E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-12456IPR009057Homeodomain-like
PfamPF002492.8E-7555IPR001005SANT/Myb domain
CDDcd116604.11E-17657No hitNo description
SMARTSM005261.4E-9104182IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150421.6118187IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.7E-13124189IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.2E-15124196IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.3E-8127180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043047Molecular Functionsingle-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSAI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKRNLPAPK IDNNHMALST VVRHDEVLDT KPLAVSGGPL RSPNLKEQIS  120
RLVDNHILEA IVNMKEQKGS DKGAIISYIE EKYRSPPNIS KLLSTKLKNM VASGKIIKEK  180
HKYRIASSSV VSDKRRCSSL EGRSKDPSEA NRNDVNILSK SQIDEEISKV KGLTAKEAAA  240
AAAKAVAEAE AAIAQAEAAA REAEAAEAEA EAAQVFAKAA MKALKCKMLH I*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00597DAPTransfer from AT5G67580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G234600.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-145AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155822.10.0hypothetical protein PHAVU_003G234600g
RefseqXP_007155824.10.0hypothetical protein PHAVU_003G234600g
SwissprotQ9FJW51e-77TRB2_ARATH; Telomere repeat-binding factor 2
TrEMBLV7CFY80.0V7CFY8_PHAVU; Uncharacterized protein
STRINGXP_007155823.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67580.24e-73MYB_related family protein
Publications ? help Back to Top
  1. Lee WK,Cho MH
    Telomere-binding protein regulates the chromosome ends through the interaction with histone deacetylases in Arabidopsis thaliana.
    Nucleic Acids Res., 2016. 44(10): p. 4610-24
    [PMID:26857545]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]