PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G244000.1
Common NamePHAVU_003G244000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 279aa    MW: 30720.4 Da    PI: 5.9692
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G244000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.81.3e-36101012102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y +++d++++++iswse gn+fvv+++ +fak++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+ke
  Phvul.003G244000.1  10 FLTKTYMLVDDPATDDVISWSELGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANECFKRGQKE 91 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll +ikr+k+
  Phvul.003G244000.1  92 LLAEIKRRKT 101
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.9E-34699IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.9E-39699IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.0E-61699IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.1E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.3E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.3703.7E-4141175IPR014751DNA repair protein XRCC4, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006302Biological Processdouble-strand break repair
GO:0006310Biological ProcessDNA recombination
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MSQRSTPAPF LTKTYMLVDD PATDDVISWS ELGNTFVVWK HADFAKDLLP KYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANECFKRGQK ELLAEIKRRK TVLQSPATGK SGGGNISASN  120
SGGDDMGSTS TGSVEGATTS QCADLSGENE KLKKDNEKLS GELARAKKQC NELVSFLRES  180
LNVCPDVINR IIRQGTCGSS DDAVRFECIR DDDDENAVGE CGAKVDDERG GESLKLFGVW  240
LKGENGNEED KVKIGTNWRK RGRDDPMAGT AKELKTLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-30510125131Heat shock factor protein 1
5d5v_B2e-30510125131Heat shock factor protein 1
5d5v_D2e-30510125131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G244000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155926.10.0hypothetical protein PHAVU_003G244000g
SwissprotP223351e-97HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLV7CF680.0V7CF68_PHAVU; Uncharacterized protein
STRINGXP_007155926.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71143247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.14e-69heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]