PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G248500.1

Common Name

PHAVU_003G248500g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

Dof

Protein Properties

Length: 234aa MW: 24497 Da PI: 8.4938

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G248500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	4.1e-38	26	86	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Phvul.003G248500.1 26 EQENLPCPRCESTNTKFCYYNNYNYSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRS 86 57899****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	6.4E-33	28	84	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.087	30	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	32	68	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	34	84	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0009751	Biological Process	response to salicylic acid
GO:0042545	Biological Process	cell wall modification
GO:0045787	Biological Process	positive regulation of cell cycle
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MPSSNSGESR RSAKPQSSAG APPPPEQENL PCPRCESTNT KFCYYNNYNY SQPRHFCKSC 60 RRYWTHGGTL RDIPVGGGSR KNAKRSRTHH TATSSSSSTM TSPQEHALPA LAPVPTTQGG 120 SMHFMDGDVN KQNNVNVCGS FTSLLNNTQG NNGFLALGGF GLGLGHGFED MGFGIGRSGW 180 GFPGMVDGAN IGGAVPSSGL STWQLESGEG GFVSGDCFSW PGLAISTPGN GLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00402	DAP	Transfer from AT3G50410	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G248500.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155977.1	1e-171	hypothetical protein PHAVU_003G248500g
Swissprot	Q39088	4e-62	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	V7CGC2	1e-170	V7CGC2_PHAVU; Uncharacterized protein
STRING	XP_007155977.1	1e-171	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	9e-53	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Phvul.003G248500.1
Entrez Gene	18635971

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]