PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G250500.1
Common NamePHAVU_003G250500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 779aa    MW: 84399.4 Da    PI: 7.2866
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G250500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-095585951954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Phvul.003G250500.1 558 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 595
                         664459******************************88 PP
2BELL122.12.3e-39418489172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +r e+q++k+kLl++l+eVd+rY++y+eq+++v++sF++v+g gsa pYt+lA+ka+SrhFrcLkdai+ q+
  Phvul.003G250500.1 418 DRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQL 489
                         589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.7E-79348487IPR006563POX domain
PfamPF075269.8E-52354486IPR006563POX domain
PROSITE profilePS5007112.568536599IPR001356Homeobox domain
SMARTSM003892.0E-9539603IPR001356Homeobox domain
CDDcd000863.69E-13539600No hitNo description
SuperFamilySSF466895.99E-17541606IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28542605IPR009057Homeodomain-like
PfamPF059204.0E-18556595IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MGIATPSSSL PSIISHSKTH QQHHSNSMSQ DYHHHQGIFS FPNGFERSAT TMSHQDPHQQ  60
QQQQQQQIRR DKVRVQGFEP QQTLVPIEED EPGSLPVYET AGMLSEMFTF PPGAATELLE  120
QQQQQQQPMT TTFRSSARAV GSGGSEWYGN RQGMLTGLGP LGDSKNHHHH GSVNSRDSSS  180
SSIVQQHQHH HHHHNHHHHH QMSSINADSA AAMQLFLMNP QTTRSPSPPP PPSSTLHMLL  240
PTFPPGSGGS FGQFTWLPDT AQDGGGPSTV VEGPGHGQGL SLSLSSSLEA AKAEELRMGD  300
SGFLYYNQAS GGPSSYKSAL GGHHHQALLG QTHQGHVAFA ASSSTSSLGV VNALRNSKYI  360
KAAQELLEEF CSVGRGQFKK NKFNRQLSNP SSNHGASGGG GGASSSLSKD VPPLSAADRI  420
EHQRRKVKLL TMLDEVDRRY SHYCEQMHMV VNSFDMVMGF GSAVPYTALA QKAMSRHFRC  480
LKDAITAQLK HSCELLGEKD GAGNSGLTKG ETPRLKLLEQ SLRQQRAFHQ MGMMEQEAWR  540
PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM  600
VEDMYQQELK EAEGAEDERE GNQSSSNNSG HQLAQTPTPS TTASTATAPP PPPTTSTATT  660
PPTAKRSDTE SDASLAPINN NRPQGAFSET QPNSSTTATA SEVAPPSELS RSMGADDSCR  720
HGSLVVTDFG TGPGASDIGS TLIRFGTTAG DVSLTLGLRH AGNMPEKTPF SVRDFGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16545602158Homeobox protein Meis1
4xrs_B2e-16545602158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G250500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156003.10.0hypothetical protein PHAVU_003G250500g
RefseqXP_007156004.10.0hypothetical protein PHAVU_003G250500g
SwissprotQ9SW801e-162BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLV7CCS10.0V7CCS1_PHAVU; Uncharacterized protein
STRINGXP_007156003.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35243257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-142BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]